Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq11 140 4e-28 seq17 118 1e-21 >seq11 Length=790822 Score = 140 bits (154), Expect = 4e-28 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 ||||| ||||||||||| ||||| ||||| || | ||||| || | || || |||||| Sbjct 632168 TGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGACCATCCTCCAGCTGC 632109 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 |||||||| || || | ||||||||||||| || | | |||||||||| ||| || Sbjct 632108 TTACCAGCAAAGATCAAGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTG 632049 Query 42126 TGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 |||| ||| | | | || || || || ||||||| ||| ||||| |||||||| Sbjct 632048 GCCTTGA-CGTTGTCAATAGTATCCGAGGACTCGACATCGAGCGTAATGGTCTTGCCCGT 631990 Query 42185 TAGCGTCTTTACAAAGATTTGCAT 42208 |||||||| |||||||||||||| Sbjct 631989 GAGCGTCTTGACAAAGATTTGCAT 631966 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 ||||| ||||||||||| ||||| ||||| || | ||||| || |||| || |||||| Sbjct 631940 TGCAACGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGGCCGTCCTCGAGCTGC 631881 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 ||||||||||| ||||||||||||||||| | || | | |||||||||| ||| || Sbjct 631880 TTACCAGCGAAAATGAGTCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGGATCTTG 631821 Query 42126 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 42185 ||| | | | | |||||| || || || || | ||||| || || || || Sbjct 631820 GCTTTCACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGTGTGATCGTCTTTCCTGTG 631761 Query 42186 AGCGTCTTTACAAAGATTTGCAT 42208 |||||||| || || || ||||| Sbjct 631760 AGCGTCTTGACGAAAATCTGCAT 631738 >seq17 Length=605135 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | |||||| ||||| || | || |||||| || || ||||| || | Sbjct 221944 ACCTCCACGGAGACGCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGA 222003 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || |||| || |||||||| || || || || ||||||||||| |||| ||| Sbjct 222004 AAGAGTGCGGCCGTCCTCGAGCTGCTTTCCTGCAAAGATAAGTCGCTGCTGATCGGGTGG 222063 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | || |||||||| ||| || |||| ||| | | | ||||| || || | Sbjct 222064 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAGGACTCGA 222122 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| |||||||| ||||| || || ||||| |||||||| ||||| Sbjct 222123 CCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTAACAAAGATCTGCAT 222171 Score = 109 bits (120), Expect = 6e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| || | || |||||| || || ||||| || | || || | |||| || Sbjct 300032 CACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGTGGCCGTCCTC 300091 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 ||||||||||||||||| || || ||||||||||||| || | || |||||||||| Sbjct 300092 AAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTG 300151 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 ||| || |||| | | | ||||| || || || |||| |||||||| || Sbjct 300152 GATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTT 300211 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||||| || ||||| || ||||| ||||| || Sbjct 300212 ACCCGTGAGGGTCTTAACGAAGATCTGCATCTT 300244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212616665680