Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05-
20] 27 sequences; 20,067,589 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq11 125 2e-23
seq17 114 3e-20
seq1 114 3e-20
>seq11
Length=790822
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| |||||||| ||||||||||| |||| |||||| || | | || | || ||
Sbjct 631721 AGGACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCC 631662
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| ||||| ||||||||||||||||| || || || || || ||
Sbjct 631661 TCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCT 631602
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||| ||| |||| ||||| | | || || || | |||||||||
Sbjct 631601 TGAATCTTGGCCTTGACGTTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATCGTC 631542
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || ||||| || ||||| || ||
Sbjct 631541 TTACCGGTCAGAGTCTTGACAAAGATCTG 631513
Score = 102 bits (112), Expect = 2e-16
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||||||||| | || |||||| || | ||||||||| | | ||| | || ||
Sbjct 631949 AGGACAAGGTGCAACGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGGCCGTCC 631890
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || ||||| ||||| ||||||||||| || || || || |||
Sbjct 631889 TCGAGCTGCTTACCAGCGAAAATGAGTCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCC 631830
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||||| |||| ||||| | | || || |||| |||||||||
Sbjct 631829 TGGATCTTGGCTTTCACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGTGTGATCGTC 631770
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| || || || ||||| ||
Sbjct 631769 TTTCCTGTGAGCGTCTTGACGAAAATCTG 631741
Score = 102 bits (112), Expect = 2e-16
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| | || |||||| || | ||||||||| | | ||| | |||||
Sbjct 632177 AGGACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGACCATCC 632118
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || || ||||| | ||||||||||| ||| || || || |||
Sbjct 632117 TCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCC 632058
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| || | || || | | || ||||| | ||| || |||
Sbjct 632057 TGGATCTTGGCCTTGACGTTGTCAATAGTATCCGAGGACTCGACATCGAGCGTAATGGTC 631998
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| |||||||| || || ||||| |||||
Sbjct 631997 TTGCCCGTGAGCGTCTTGACAAAGATTTG 631969
>seq17
Length=605135
Score = 114 bits (126), Expect = 3e-20
Identities = 146/201 (73%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485
|||||| ||||||||||| |||| ||||||||| | | ||| | || || || |||||
Sbjct 221968 GTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTG 222027
Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545
|||||| || ||||| || |||||||| || || || ||||| || || |||||
Sbjct 222028 CTTTCCTGCAAAGATAAGTCGCTGCTGATCGGGTGGGATGCCTTCCTTGTCTTGGATCTT 222087
Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605
||| ||| |||| |||||| | | || || || | ||||| ||||| || ||
Sbjct 222088 GGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 222147
Query 199606 GAGAGTTTTCACAAAAATTTG 199626
|||||| || ||||| || ||
Sbjct 222148 GAGAGTCTTAACAAAGATCTG 222168
Score = 107 bits (118), Expect = 5e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | |||||| ||||||||||| |||| ||||||||| | | || || ||
Sbjct 300030 AGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGTGGCCGTCC 300089
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || |||||||| || ||||||||||| || || || || |||
Sbjct 300090 TCAAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 300149
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || |||| |||||| | | || || || | ||||| |||
Sbjct 300150 TGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGAGTGATGGTC 300209
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||||||||| || || || || || ||
Sbjct 300210 TTACCCGTGAGGGTCTTAACGAAGATCTG 300238
>seq1
Length=2009762
Score = 114 bits (126), Expect = 3e-20
Identities = 138/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|||||||||||||||||||||||||| |||| ||||||||| | | || | || ||
Sbjct 1808592 AGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGGCCGTCC 1808533
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| ||||||||||| || ||||||||||| || || || || |||
Sbjct 1808532 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 1808473
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||| || | || |||||| | | || || || | || || |||
Sbjct 1808472 TGAATCTTGGCCTTGACATTGTTGATGGTGTCCGAGGACTCCACCTCGAGGGTAATGGTC 1808413
Query 199598 TTACCCGT 199605
||||| ||
Sbjct 1808412 TTACCTGT 1808405
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178921192166809
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |