Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq8 340 2e-88 seq17 132 5e-26 seq11 114 1e-20 seq1 91.5 1e-13 >seq8 Length=837966 Score = 340 bits (376), Expect = 2e-88 Identities = 412/553 (75%), Gaps = 11/553 (2%) Strand=Plus/Minus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| ||||||||| |||| || ||||| | || ||||| |||||| ||| || | Sbjct 244931 GCAGGCAAAGTCGGTGTGCAGACCTTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAG 244872 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 ||||||||||| ||||| || |||||||| || |||| |||||| ||| || ||||| Sbjct 244871 ACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAA 244812 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 || ||| || ||||| || || || || || |||||| |||| ||||| ||| | Sbjct 244811 GATGCCTTCAACGGCGGCAAAGGCGACGAGACGCTCGGCGAAAGTGGCGCGCTTGTCGCT 244752 Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTT 133133 |||||| ||||||||||| ||||| || | |||||| || || || |||| |||| | Sbjct 244751 GATCCATCGCAGCGCCCAGTCGGCTTTCTGCTTGACGACGGGGATGGTCTCGACGGCG-T 244693 Query 133134 CAACAAACGGAG-TTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATA 133190 || || |||| | | || | || ||| | |||||||||||||||| ||| || Sbjct 244692 CA--AAGAGGAGCTCGCGCTGCTCGGGCTCGCGAATGTAGGTGTCGATGAGGAGCGAGTA 244635 Query 133191 CATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGAC 133250 | |||||||| | ||||||||| ||| || || ||||| ||||| || |||||| | Sbjct 244634 GGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCGGC 244575 Query 133251 CACCTGCACTTCTTGAGC-GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGG 133309 | ||||| || |||| |||||||||||| || || ||||||||||| |||||| | Sbjct 244574 GGCTTGCACCTC-GGAGCTGAAACGCTCGACGAGGTTCTCGTTGACGATACCGTCGGAAG 244516 Query 133310 CGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT---CAAGCGCT 133366 ||||||| ||||| || |||||| ||| || ||||| ||||||||||| | | | Sbjct 244515 CGGCGAAGAAGGCGAGGACGTGCGAGATAAAGTGGCGTTCGTTGTCGTTGAGCTTGTTGT 244456 Query 133367 CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGG 133426 |||||||| | |||||||| ||||| | ||| ||| ||||||| || || ||||||| Sbjct 244455 CCCAGTCGTGGAGATCCTTGGAAAGGTCGATCTCTTCGGCGGTCCAGAAGGAAGCCTCGG 244396 Query 133427 CTTTTTTGTACAT 133439 | ||||||||||| Sbjct 244395 CCTTTTTGTACAT 244383 >seq17 Length=605135 Score = 132 bits (146), Expect = 5e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| || |||||||| |||| |||||| | Sbjct 300244 AAGATGCAGATCTTCGTTAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTCGAGTCT 300185 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| ||||| || ||| ||||| Sbjct 300184 TCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 300125 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| || || ||||| || |||| | |||||| |||||| Sbjct 300124 CAGCAGCGCCTGATCTTCGCTGGTAAGCAGCTTGAGGACGGCCACACCCTTTCGGACTAC 300065 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| ||||| |||| || || |||||||| || Sbjct 300064 AACATCCAGAAGGAGTCGACCCTCCACTTGGTGCTCCG 300027 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| ||||||||| |||| |||||| || | Sbjct 222171 ATGCAGATCTTTGTTAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 222112 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || || || |||| || Sbjct 222111 GACACCATCGACAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCCGATCA 222053 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || ||||| || |||| ||||| || ||||||||| Sbjct 222052 GCAGCGACTTATCTTTGCAGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAA 221993 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| ||||||| || ||||| ||||| Sbjct 221992 CATCCAGAAGGAGTCGACGCTCCACTTGGTTTTGCGT 221956 >seq11 Length=790822 Score = 114 bits (126), Expect = 1e-20 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || |||||||| || || || ||||| | || |||||| | | Sbjct 631738 ATGCAGATTTTCGTCAAGACGCTCACAGGAAAGACGATCACACTGGAGGTCGAGTCTTCG 631797 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | | | |||| || |||| ||||| ||||| || |||||| ||||| Sbjct 631798 GACACGATCGACAATGTGAAAGCCAAGATCCAGGACAAGGAGGGTAT-CCCGCCTGACCA 631856 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||||| ||| || || ||||| || |||| || || ||| ||||||||| Sbjct 631857 GCAGCGACTCATTTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACTCTCTCCGACTACAA 631916 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| ||| ||| |||| | || || || ||| | || || Sbjct 631917 CATTCAGAAGGAGAGC-ACGTTGCACCTTGTCCTTCGATTGCGCGGAGG 631964 Score = 105 bits (116), Expect = 7e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || |||||||||||||| ||||| || |||| |||||| || | Sbjct 631966 ATGCAAATCTTTGTCAAGACGCTCACGGGCAAGACCATTACGCTCGATGTCGAGTCCTCG 632025 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| | || | || |||| ||||| ||||| || || ||||||| Sbjct 632026 GATACTATTGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCA 632084 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || || || |||||||| || | ||||| || |||||||| Sbjct 632085 GCAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTCTTTCGGACTACAA 632144 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| ||| || |||| | || || ||| || | ||||| Sbjct 632145 CATTCAGAAGGAGAGC-ACCTTGCACCTCGTCCTCCGTCTGCGTGGCGG 632192 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || || |||||| |||| || ||| | || Sbjct 631510 ATGCAGATCTTTGTCAAGACTCTGACCGGTAAGACGATCACCCTCGAGGTGGAGTCTTCC 631569 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | ||||| ||||| || || | || || Sbjct 631570 GACACTATCGACAACG-TCAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCTGATCA 631628 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || ||||| ||||| || |||| |||||||| ||| ||||| Sbjct 631629 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTTTCCGATTACAA 631688 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| |||| || || |||| || ||| Sbjct 631689 CATCCAGAAGGAGTCGACCCTCCACCTGGTCCTCCGT 631725 >seq1 Length=2009762 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327 || || || ||||| ||| |||| || ||| || | |||| | | | | | || | Sbjct 1808405 ACAGGTAAGACCATTACCCTCGAGGTGGAGTCCTCGGACACCATCAACAATGTCAAGGCC 1808464 Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || || | ||||| ||||| || ||| | ||||| ||||| || || | ||| ||||| Sbjct 1808465 AAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAG 1808524 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || |||| ||||| || |||||||||||||| ||||| |||| || || Sbjct 1808525 CAGCTCGAGGACGGCCGCACGCTTTCGGACTACAACATCCAGAAGGAGTCGACTCTCCAC 1808584 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 | || || ||| || | || || Sbjct 1808585 CTTGTCCTCCGTCTGCGTGGTGG 1808607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172631191680