Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05-
20] 27 sequences; 20,067,589 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq19 226 3e-54
seq4 109 6e-19
seq8 84.2 3e-11
>seq19
Length=580969
Score = 226 bits (250), Expect = 3e-54
Identities = 1054/1647 (64%), Gaps = 46/1647 (3%)
Strand=Plus/Plus
Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559
||| | |||||| ||||| |||||| |||||| || || ||||||||||||||
Sbjct 519345 GTTGAGCGACTGCGACTGGCAGATGAAAGCACCACGGTCGGCGGCCATGTCGATGATGGC 519404
Query 109560 CTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCAC 109619
||| ||||| || |||||||| |||||||| | |||||||| ||||| ||| |
Sbjct 519405 CTTCTGGCTGATCTCCCAGACGGTCTTGTAGAGCTTCTTGATGCGGTCGGGGATGCCGGG 519464
Query 109620 GATGTTTTGAATAGAGCCACC---AGCCTTCACCATGAGATCCTTCATCTCTTTCGA-CC 109675
| ||| || || || || || ||| | | || | | ||||||| | ||| ||
Sbjct 519465 CACGTTCTGGATGGAACCGCCGTGAGCGATGA---TGCGGTTCTTCATCG-TGTCGTTCC 519520
Query 109676 AGAGACCGACCTTTTTGAGATCGT----CAACAAGATGCTTGTTGACCACGACAAATTCA 109731
| ||||| || ||| ||| |||| | | | ||| ||||| || |||
Sbjct 519521 ACAGACCCTGCTCGACGAGCTCGCGGAGCAACCA-AGG---GTTCACCACCTGGAACTCA 519576
Query 109732 CCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTG 109791
|| || || || || ||||||||| | |||||| || ||||| ||||| ||| |
Sbjct 519577 CCGGCGAGCACACGACGCGAGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCGTTGAAG 519636
Query 109792 CCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGA 109851
|| ||||| || || || || |||||||||||||| | ||||| ||| || |||
Sbjct 519637 CCGAGGATCTGACTGGTCGAGGCGGTGGGCATGGGAGCGAGCAGAAGCGAGTTGCGCAGA 519696
Query 109852 CCCTTCGTCTTTACCCGCTCACGCATTG----CGTCCCAATCATAACGACCACTAAATTT 109907
|| | | || | || || ||| || |||| || | | | | |
Sbjct 519697 CCGTGC---TTGGCGATCTTG-GCCTTGAGCTCGGCCCAGTCCCAGAGGTC-CGAGG--- 519748
Query 109908 AGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAA 109967
| | || ||||||| || || || |||||| | ||| || || || | |
Sbjct 519749 -GGGTGACG--CCCACATGTCGTACTGCAGCTCACCCTGCGAAGCGGGCGAGCCGGCGTA 519805
Query 109968 ACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATA 110027
||||||| | || | || |||| |||| | || ||| || || || || ||
Sbjct 519806 GGTCTCGTAGGTGCCGTGCTGCTGAGCCAGCTCGCACGATCGCTCGAGAGCGGCGTGGTA 519865
Query 110028 CATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGG-GAAGAC 110086
|| ||||| || ||||| | || | | |||| ||| | | || |||| | || |
Sbjct 519866 GATGGTCTCGAAGATATGCACGTTGAGACGACGAGCCTCGGGAGACTCAAAGGCGTAGCC 519925
Query 110087 CACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCA 110146
|| | | | || | || || |||||||| ||||||| ||| ||||| || || ||
Sbjct 519926 CATGATCA-TGAAGGCGTCGGCAAGACCCTGGACACCGATACCGATGGGACGGTGGCGCA 519984
Query 110147 TGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGAT 110206
|||| || || || || || |||||||| ||||| |||||||| | || || |
Sbjct 519985 TGTTGGATCGACGGGCCTCCTCGACGGGGTAGTAGTTGATGTCGATGATCTTGTTAAGGT 520044
Query 110207 TCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCT 110266
|||| | | ||| | || || || || | | | ||| |||| || | |
Sbjct 520045 TCTTGCAGATGGCCTTGGCGACCTCGTGCAGACGTTTGAAGTCGTACGTCTTGGCGACGG 520104
Query 110267 TATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGT 110326
| || | ||||||| || || || || | ||||| |||| |||||| |
Sbjct 520105 GGTCGATGAAGGTGGGGAGGGCGATCGAGGCCAAGTTGCAGACAGCCACCTCGTCGGGGG 520164
Query 110327 CGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCT 110386
|| |||| || | ||| || || ||||||||||| | ||| ||| || | ||||||||
Sbjct 520165 CGCTGTACTCGATAATCTCGGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGTTCTTCT 520224
Query 110387 GATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCT 110446
| || ||| ||| |||||||| ||||| ||| | ||| | || || || ||||
Sbjct 520225 GGTTGCTCTTGCGGTTAGCGGCATCCTTGTAGAGGATGAAGGGGTTGCCGGTCTCGGTCT 520284
Query 110447 GTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCG-TTAGCGAGACC 110504
| |||| ||| ||||| | ||| | | || | ||| ||| | |||| || || | ||
Sbjct 520285 GCGACTCGAGGATGGCGTACCAGAGCTTCTG-GGCCTTGAC-GGTGCGCTTGGCACGGCC 520342
Query 110505 TTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACC 110564
|| ||||||| ||| | | |||||| || | ||||| |||| || ||
Sbjct 520343 CTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCGCCGTAGCAGTCAGCGAGGCC 520402
Query 110565 CTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAA 110624
|| || ||| || | ||| ||||| | || || ||| ||||||||||||||
Sbjct 520403 GGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAA 520462
Query 110625 CAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTG 110684
|| || || | ||| | || |||| || || ||| ||| |||| || | || ||
Sbjct 520463 GAGATCGGGCACCCAGAGTGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCCTTGCCGTG 520522
Query 110685 GTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGC 110744
||| ||| || || | || || | || |||||||||||||| || | || | ||
Sbjct 520523 GTTCTTGCGGAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGCTCAACGTAAATGGC 520582
Query 110745 GATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGAC 110801
| || || ||| || |||||| || ||||| || ||| ||||||||
Sbjct 520583 AAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCGGTGTTGTTGAAGAC 520642
Query 110802 CCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATT 110861
| |||||| || | || || | | ||| || ||||| ||| ||| |
Sbjct 520643 GCGGAGCATGGGCACGATACCGTTGCTGACACCGTTGGTACCGGCAATGTAGGAACCGGT 520702
Query 110862 GGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA 110921
| | || ||| |||||| | | || |||||||| || ||| || |||||
Sbjct 520703 GCCGCGGATGCAGTGGATGTTGAGGCCGATACCACCGGCGGTCTTGGAGATCATGGCACA 520762
Query 110922 C-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGC 110980
| ||| |||| || | || || ||||| ||||| || |||| ||| | || ||||
Sbjct 520763 CGTCT-TGAGCGTGTCGTAGATGCCATCGATCGAGTCGTCCTTCATGGTGACGAGGAAGC 520821
Query 110981 AAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGA 111040
| || || | |||||| | || || || || |||||||| || || | || || ||
Sbjct 520822 ACGACGAGAGCTGAGGGTGCGGGGTACCTGCGTTGAAGAGGGTGGGGGAGGCGTG--TGT 520879
Query 111041 ACAG-AC-CTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTG 111098
| || || ||| ||||| |||||| || || | ||| | || | |||||
Sbjct 520880 AAAGTACTTTTGCGACATGAGGTTGTAGGTCTCAATGGCGCTCTCGATGTCCTGGCCGTG 520939
Query 111099 AATACCAATGGCAACTCGCATGAACAT 111125
||||| | ||| || ||||||| |||
Sbjct 520940 GATACCGACGGCGACACGCATGAGCAT 520966
>seq4
Length=1271980
Score = 109 bits (120), Expect = 6e-19
Identities = 317/477 (66%), Gaps = 17/477 (4%)
Strand=Plus/Plus
Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562
|| ||||| ||||| || || | || ||| |||| || | || ||||| ||| ||
Sbjct 926095 CGGTCGAATCGACCGGGACGCATGAGCGCAGCATCGAGCACGTCCGGTCGGTTGGTACCG 926154
Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622
|| | || || | | ||| | ||||||||||||| | ||| | || ||||
Sbjct 926155 GCCAGCACGACGACGTGCTCCTCGGTACCGAAACCGTCCATCTGCACGAGCAACTCGTTG 926214
Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATA---CCACC--TGCCGAACGCTTCTTAC 11677
| ||| || ||||| |||||| | | | ||||| |||| ||| ||||||
Sbjct 926215 AGCGTTGACTCGCGCTCGTCGTTGCCGCCAAAATTGCCACCCTTGCC--ACGGCTCTTAC 926272
Query 11678 CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTT--C 11735
||| ||||| ||||| ||||| || | ||| || || || | | || | ||| |
Sbjct 926273 CGATGGCGTCGATCTCGTCGATAAAGATGATGCAGGGCGCGT-GCTTCTTGGC-GTTGGC 926330
Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795
||| | || || || || | | || ||||| || ||||| || || || | | |
Sbjct 926331 GAACATGTCTCGCACTCGGCTAGGACCGACACCGACAAACATTTCGACAAACTCGGAACC 926390
Query 11796 AGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCT 11854
|| || || | |||||| ||| || |||||| ||| |||| || || || ||||
Sbjct 926391 CGAG-ACGGACAGGAAGGGCACACCAGCCTCACCGGCGGTGGCCTTGGCAAGCAGCGTCT 926449
Query 11855 TACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTTCC 11912
|||| ||||| || | ||| | ||| | |||||||| ||||||||||| || |||
Sbjct 926450 TACCGGTACCGGGAGGACCGGAGAGGATAGCGCCACGCGGGATCTTGGCGCCGAGCTT-- 926507
Query 11913 AAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969
||| || |||||||||||||||| |||| |||| | || ||||||||
Sbjct 926508 TTCGTACTTTTCGGGCTTCTTGAGGAAGTTGACAAACTCCATGATCTCTTCCTTGGC 926564
>seq8
Length=837966
Score = 84.2 bits (92), Expect = 3e-11
Identities = 167/244 (68%), Gaps = 5/244 (2%)
Strand=Plus/Minus
Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554
|||||| || || || ||||| || || ||||||||||| || |||| || ||
Sbjct 244928 GGCAAAGTCGGTGTGCAGACCTTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGACC 244869
Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614
|||||||| || | ||||| ||||| ||||||| || || || ||||||||
Sbjct 244868 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGAT 244809
Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAGACTTGTC---GA 119670
||| || || ||| || |||| |||||||| || |||| | || | |||||| ||
Sbjct 244808 GCCTTCAACGGCGGCAAAGGCGACGAGACGCTCGGCGAAAGTGGCGCG-CTTGTCGCTGA 244750
Query 119671 ACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGA 119730
||| || ||||||| ||| || ||| | | ||||| || | || ||| || |
Sbjct 244749 TCCATCGCAGCGCCCAGTCGGCTTTCTGCTTGACGACGGGGATGGTCTCGACGGCGTCAA 244690
Query 119731 AAAG 119734
| ||
Sbjct 244689 AGAG 244686
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588975801220600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |