Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05-
20] 27 sequences; 20,067,589 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq11 123 2e-23
seq17 118 7e-22
>seq11
Length=790822
Score = 123 bits (136), Expect = 2e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844
||||| || ||||||||||| ||||||||||| | || |||| |||||||| || ||
Sbjct 632162 GTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGACCATCCTCCAGCTGCTTACCA 632103
Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904
||||| || | || |||||||| | || | ||||||||||| ||||| |||
Sbjct 632102 GCAAAGATCAAGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTG 632043
Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964
||| | || | || || ||| ||||||| || ||||| || |||||||| |||
Sbjct 632042 ACGTTGTCAATAGTATCCGAGGACTCGACATCGAGCGTAATGGTCTTGCCCGTGAGCGTC 631983
Query 34965 TTCACAAAGATCTGCATA 34982
|| |||||||| ||||||
Sbjct 631982 TTGACAAAGATTTGCATA 631965
Score = 96.9 bits (106), Expect = 2e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| || || |||||| | || | || || ||||| || ||||||||
Sbjct 631700 TCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAG 631641
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || ||||| || | || | ||||||||||| |||||| ||||||
Sbjct 631640 ATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGAATCTTGGCCTTGACGTTG 631581
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | ||| || |||| ||| || || || || || |||||||| |||
Sbjct 631580 TCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTACCGGTCAGAGTCTTGACA 631521
Query 34971 AAGATCTGCAT 34981
|||||||||||
Sbjct 631520 AAGATCTGCAT 631510
Score = 93.3 bits (102), Expect = 3e-14
Identities = 144/202 (71%), Gaps = 8/202 (4%)
Strand=Plus/Minus
Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844
||||| || ||||||||||| ||||| || || | || | || || ||||| || ||
Sbjct 631934 GTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGGCCGTCCTCGAGCTGCTTACCA 631875
Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904
|| || || ||||| |||||||| |||| | ||||||||||| ||||| |||
Sbjct 631874 GCGAAAATGAGTCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGGATCTTGGCTTTC 631815
Query 34905 ACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960
|| || | ||||| | ||| | ||| || || | || || || ||||| |||||
Sbjct 631814 AC--AT--TGTCGATCGTGTCCGAAGACTCGACCTCCAGTGTGATCGTCTTTCCTGTGAG 631759
Query 34961 AGTCTTCACAAAGATCTGCATA 34982
||||| || || |||||||||
Sbjct 631758 CGTCTTGACGAAAATCTGCATA 631737
>seq17
Length=605135
Score = 118 bits (130), Expect = 7e-22
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
|||||||||||| | || || ||||| ||||| ||||| ||||| | || | ||
Sbjct 221959 CAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTC 222018
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
|| ||||| ||||| ||||| || ||||| ||||| || | || | || ||||||||
Sbjct 222019 CTCGAGCTGCTTTCCTGCAAAGATAAGTCGCTGCTGATCGGGTGGGATGCCTTCCTTGTC 222078
Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| |||||| | || | ||| || ||| || |||| ||| |||||
Sbjct 222079 TTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGT 222138
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || ||||||||||| ||||||||||||||
Sbjct 222139 CTTGCCGGTGAGAGTCTTAACAAAGATCTGCAT 222171
Score = 95.1 bits (104), Expect = 8e-15
Identities = 153/216 (71%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | || || ||||| ||||| |||||||||||| | | | || ||
Sbjct 300033 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGTGGCCGTCCTCA 300092
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || || || || || || || |||||||| | || | |||||||||||
Sbjct 300093 AGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 300152
Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948
||||| ||||| || | ||||| | ||| | ||| || |||| || |||||
Sbjct 300153 ATCTTGGCCTTGAC--AT--TGTCGATGGTGTCCGAAGACTCGACCTCGAGAGTGATGGT 300208
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|| |||||||| ||||| || ||||||||||| ||
Sbjct 300209 CTTACCCGTGAGGGTCTTAACGAAGATCTGCATCTT 300244
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324633493175256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |