Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05-
20] 27 sequences; 20,067,589 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq1 150 1e-31
>seq1
Length=2009762
Score = 150 bits (166), Expect = 1e-31
Identities = 433/659 (66%), Gaps = 44/659 (7%)
Strand=Plus/Minus
Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824
|||| ||||| || || ||||| | ||| ||||| |||||| ||||||||| ||
Sbjct 1711150 TGGGGAAGGGCAGAGGATCTCTCTCCAACTGCACCTTCAACGGTTCTACGTGATCCTTGT 1711091
Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884
||||||| || || |||| || | | || || ||| ||||| |||| || | |
Sbjct 1711090 AGACGTGCGCATCGCCCATGGCGAGCACCAATTCTTTAGGTTCGCAATCGGTCACCTTGG 1711031
Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944
| |||||||| || | |||| |||||| || ||||| || || || || | || | |
Sbjct 1711030 CGATCATGTAGGTCAACAGAGCGTAGCTAGCAATGTTGAACGGAACGCCCAAACCGAGAT 1710971
Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCT-CT-----CCGTCGC------------ 29986
| | || | |||||| | ||||||||||| | || || ||||
Sbjct 1710970 CGCATGAACGCTGGTACATTTGACACGAGAGGTGCTTTTTGCCCTCGCCGCGGGCGTAGG 1710911
Query 29987 --TC----------ACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCATGA 30031
|| ||| | ||||| | ||| |||||||||| || || ||||| |
Sbjct 1710910 CGTCGAGGTTCGAGACGAAGAACTGCGCAAACA---TGTGGCACGGCGGCAGCGCCATCA 1710854
Query 30032 GGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCC 30091
| | | ||| |||||||||||||||| | | |||||| | ||| |||||||||
Sbjct 1710853 GTTCGAGGTCCTTGGGGTTCCAGGCGCTGAGCAGGATGCGACGGTCGGTAGGGTTGTTCT 1710794
Query 30092 TGATGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTC 30150
|||| ||| | | || || || ||||| || || || | ||||| || ||
Sbjct 1710793 TGATCTTGTCGATCAC-TTGAGCGAGTTGATCGACGCCTTGACCGGTGTAGT-TGGTATC 1710736
Query 30151 -ATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209
|| ||||||||||| || || || | ||| ||||| ||||| || || |||| |||
Sbjct 1710735 GCAATCTGTGTACTCTGCGCCAAAGTGTCGCCATTGGAAACCGTAGACGGGGCCCAAGTC 1710676
Query 30210 TCCCTCTTCCCTGTGCTCGA-AGCCC-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCG 30267
|| ||| | ||| || ||||| | | ||| | || || | || |||||| ||
Sbjct 1710675 GCCTTCTCTGCGGTG--AGACAGCCCGCGCGAGTCGAGGAATTCACGCGATCCGTTGCCG 1710618
Query 30268 TCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAAC 30327
|||||||| | ||| ||||| || | |||| ||| || | || || || |||
Sbjct 1710617 TCCCAGATGTGTACGCCCTTATCTGTGAGCAGTTTCGAATCGGTCTTGCCAGCAACAAAC 1710558
Query 30328 CACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30386
|| || |||||||| | ||| | ||||||| | |||||| ||||| || || ||
Sbjct 1710557 CAGAGGAGCTCCTCGAGCACGCCACGGAAAAAGACACGCTTGGTGGTGAGCAGAGGCAA 1710499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408617465539271
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |