Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq19 183 3e-41 seq17 132 4e-26 seq11 120 3e-22 >seq19 Length=580969 Score = 183 bits (202), Expect = 3e-41 Identities = 972/1524 (64%), Gaps = 49/1524 (3%) Strand=Plus/Plus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| || |||||||| | || ||||| ||| |||||| ||| ||||||| || Sbjct 519565 ACCTGGAACTCACCGGCGAGCACACGACGCGAGTAGATGTTGGACGTGTAAGGCTCGAAG 519624 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 | |||||| || || |||||| || | ||||| |||||| || | || ||| Sbjct 519625 CACTCGTTGAAGCCGAGGATCTGACTGGTCGAGGCGGTGGGCATGGGAGCGAGCAGAAGC 519684 Query 138628 GAATTCCGTAAACCGTGAAGCTTGAT--TCGTT-CCTTGAGCGACGACCAGTCCCACAAA 138684 || || || | |||||| |||| || | |||||||| | ||||||||| | Sbjct 519685 GAGTTGCGCAGACCGTG---CTTGGCGATCTTGGCCTTGAGCTCGGCCCAGTCCCAGAGG 519741 Query 138685 TCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCT 138744 || | ||| | |||||| |||||||| | | ||| ||||| ||| Sbjct 519742 TC-CGAGGGGGTGACGCCCACATGTCGTACTGCAGCTCACCCTGCGAAGCGGGCGAGCCG 519800 Query 138745 TCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTT-GCTCGCCTCGAGCGCACC 138803 |||| | ||||| || || || |||| |||| | |||| ||||| || | Sbjct 519801 GCGTAGGTCTCGTAGGTGCCGTGCTGCTGAGCCAGCTCGCACGATCGC-TCGAGAGCGGC 519859 Query 138804 ATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGG 138863 | ||| || || ||| || ||| ||||| || ||||||| ||| | || Sbjct 519860 GTGGTAGATGGTCTCGAAGATATGCACGTTGAGACGACGAGCCTCGGGAGACTCAAA-GG 519918 Query 138864 CAT-GCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGAT 138922 | | || | ||| |||| |||||||| || || || || || | |||| || || | Sbjct 519919 CGTAGCCCATGATCATGAAGGCGTCGGCAAGACCCTGGACACCGATACCGATGGGACGGT 519978 Query 138923 GGCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGT 138982 |||||| || || || | |||| || || ||||| | |||||||| |||| Sbjct 519979 GGCGCATGTTGGATCGACGGGCCTCCTCGACGGGGTAGTAGTTGATGTCGATGATCTTGT 520038 Query 138983 TTAAATT-TCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCC 139041 | | || | ||| || |||| | | | | |||| || ||||| || Sbjct 520039 TAAGGTTCTTGCA-GATGGCCTTGGCGACCTCGTGCAGACGTTTGAAGTCGTACGTC--- 520094 Query 139042 CCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACC 139101 | | ||||| ||||| || || || |||||||| | |||||| || Sbjct 520095 ------TTGGCGACGGGGTCGATGAAGGTGGGGAGGGCGATCGAGGCCAAGTTGCAGACA 520148 Query 139102 GCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATC 139161 ||||| ||||||||| ||||||| |||| ||| |||| ||||| || |||||||| Sbjct 520149 GCCACCTCGTCGGGGGCGCTGTACTCGATAATCTCGGTGCACAAGTTGGAGCACTTGATG 520208 Query 139162 GTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGT 139221 || || | || | || ||||| || |||||| ||||| ||||| || || | || Sbjct 520209 GTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTAGCGGCATCCTTGTAGAGGATGAAGGGG 520268 Query 139222 GTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACA-AGTCCCTAG--CTTGTATT 139278 |||| || || || | ||| | ||| | | || || || | |||| Sbjct 520269 TTGCCGGTCTCGGTCTGCGACTCGAGGATGGCGT--ACCAGAGCTTCTGGGCCTTGACGG 520326 Query 139279 TGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACC 139337 || ||| | | | | ||| |||||| |||||||| || || |||| | || Sbjct 520327 TG-CGCTTGGCACGGCCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGT-CGCC 520384 Query 139338 GTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGC 139397 |||| ||||| || || | |||| || || |||||||||||||| |||||||| Sbjct 520385 GTAGCAGTCAGCGAGGCCGGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTG 520444 Query 139398 CTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTT 139457 || ||| | | ||||||| ||||| || | ||| | ||| | | | || || || Sbjct 520445 CTCGACCCTCTTCATGAAGAGATCGGGCACCCAGAGTGCGTAGAAGAGCTCTCGGGCACG 520504 Query 139458 CTTATCTTCCGAACCCATGTTACGTTTC--ATGTTAAGGAAATCAAAAACGTCAGCGTGC 139515 | || ||| || ||| || | | || ||||| ||||| ||||| | |||| Sbjct 520505 CACCTCCTCCTTGCCGTGGTTC--TTGCGGAGGTCGAGGAACTCAAAGACGTCCGAGTGC 520562 Query 139516 CATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGT 139572 ||||| || | || ||||| | || || || ||| ||||| || ||||||| Sbjct 520563 CATGGCTCAACGTAAATGGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAG 520622 Query 139573 CGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTT-CCGTTGGT 139631 || | | || ||||| ||||| | ||| ||| | | |||| | |||| |||||||| Sbjct 520623 CGGGCGGTGTTGTTGAAGACGCGGAGCATGGGCACGATACCGTT-GCTGACACCGTTGGT 520681 Query 139632 ----GCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGC 139687 || | | | || || | ||| | |||| | || | |||| |||||| || | Sbjct 520682 ACCGGCAATGTA-GGAACCGGTGC---CGCGGATGCAGTGGATGTTGAGGCCGATACCAC 520737 Query 139688 CGCCAAATTTGGATATTAAAACGCAA-TCGCGTAATGTCTCGTATATACCTCTTATGCTG 139746 || | ||||| || | | || || | | || ||||| || || || | Sbjct 520738 CGGCGGTCTTGGAGATCATGGCACACGTCTTG-AGCGTGTCGTAGATGCCATCGATCGAG 520796 Query 139747 TCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCA 139806 ||||||| ||| ||||| || ||||| ||||| || || || | || || || Sbjct 520797 TCGTCCTTCATGGTGACGAGGAAGCACGACGAGAGCTGAGGGTGCGGGGTACCTGCGTTG 520856 Query 139807 AACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATG 139866 || || || || ||||| || || | || |||||| | | ||| || || ||| Sbjct 520857 AAGAGGGTGGGGGAGGCGTGTGTAAAGTACTTTTGCGACATGAGGTTGTAGGTCTCAATG 520916 Query 139867 GCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGGATC 139926 |||||| | || ||| |||||||||||||| | ||| ||||| ||||| || ||| Sbjct 520917 GCGCTCTCGATGTCCTGGCCGTGGATACCGACGGCGACACGCATGAGCATGTGCTGGGGA 520976 Query 139927 CGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGGGTCTTGTAGCCA 139986 || || || ||| ||| | ||| || || | ||| || |||||| |||| Sbjct 520977 CGCTCTGCGACCTTGCCGTTGATGCGGAGGAGGTAGGAGCGCTCGAGCGTCTTGAAGCCG 521036 Query 139987 AAGTACCTATAGTTGAAATCGAGC 140010 ||| | | |||| ||| ||| || Sbjct 521037 AAGAAGTTGTAGTGGAAGTCGCGC 521060 >seq17 Length=605135 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| |||| || || ||||| || || || || ||||| || || || | Sbjct 222172 GATGCAGATCTTTGTTAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTC 222113 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||||| ||||| || || |||||||| Sbjct 222112 TGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCCGATCA 222053 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | |||||||| || || ||||| ||||| | | | || || || || Sbjct 222052 GCAGCGACTTATCTTTGCAGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAA 221993 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| ||||| || |||||||| ||||| | || ||||| Sbjct 221992 CATCCAGAAGGAGTCGACGCTCCACTTGGTTTTGCGTCTCCGTGGAGG 221945 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| |||| || || || ||||| || || || ||||| || || | | Sbjct 300242 GATGCAGATCTTCGTTAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTCGAGTCTTC 300183 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| || || || || ||||| || Sbjct 300182 GGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 300123 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA---TGTCAGATTA 24879 || || ||||||| || || || ||||| ||||| || | ||| | || || || Sbjct 300122 GCAGCGCCTGATCTTCGCTGGTAAGCAGCTTGAGGA--CG-GCCACACCCTTTCGGACTA 300066 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || ||||| ||||| || ||||||||| | || |||| || || Sbjct 300065 CAACATCCAGAAGGAGTCGACCCTCCACTTGGTGCTCCGCCTGCGTGGTGG 300015 >seq11 Length=790822 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || |||||||| || || || ||||| || || | || Sbjct 631510 ATGCAGATCTTTGTCAAGACTCTGACCGGTAAGACGATCACCCTCGAGGTGGAGTCTTCC 631569 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| |||||||| || || || || || ||||| Sbjct 631570 GACACTATCGACAACGTCAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCTGATCAG 631629 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||||||||| || ||||| ||||| | | | | || ||||| ||| Sbjct 631630 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTTTCCGATTACAAC 631689 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| ||||| || ||| |||| Sbjct 631690 ATCCAGAAGGAGTCGACCCTCCACCTGGT 631718 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || ||||| || || || || ||||||||||| || || || | Sbjct 631966 ATGCAAATCTTTGTCAAGACGCTCACGGGCAAGACCATTACGCTCGATGTCGAGTCCTCG 632025 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| || || || |||||||| || Sbjct 632026 GATACTATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAG 632085 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||| || || |||||||||||| | | | || || || ||| Sbjct 632086 CAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTCTTTCGGACTACAAC 632145 Query 24884 ATTCAAAAGGA 24894 ||||| ||||| Sbjct 632146 ATTCAGAAGGA 632156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897448159560