Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1 181 1e-40 >seq1 Length=2009762 Score = 181 bits (200), Expect = 1e-40 Identities = 466/707 (66%), Gaps = 56/707 (8%) Strand=Plus/Minus Query 146840 TGAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAGGGTCGGGGGT 146899 |||| ||||| || |||| | |||| ||| ||||||||||||||||| | || | Sbjct 1711192 TGAAGTCGTCAATATCCTTGATATCCCTCCTAATGTTGAGCTTGGGGAAGGGCAGAGGAT 1711133 Query 146900 TCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCA 146959 || ||| ||| | |||| || || ||||| | |||||||||||| || |||| Sbjct 1711132 CTCTCTCCAACTGCACCTTCAACGGTTCTACGTGATCCTTGTAGACGTGCGCATCGCCCA 1711073 Query 146960 GGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCA 147019 || | |||| || || || | ||||||| | ||| | ||||||||| | || Sbjct 1711072 TGGCGAGCACCAATTCTTTAGGTTCGCAATCGGTCACCTTGGCGATCATGTAGGTCAACA 1711013 Query 147020 GCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACA 147079 | | |||||| || |||||||| || || |||| || | || | || | |||||||| Sbjct 1711012 GAGCGTAGCTAGCAATGTTGAACGGAACGCCCAAACCGAGATCGCATGAACGCTGGTACA 1710953 Query 147080 GCTGGCACGAGAGCT--------CCC----------------CGTCG------GCCACGT 147109 || |||||||| | ||| ||||| | ||| Sbjct 1710952 TTTGACACGAGAGGTGCTTTTTGCCCTCGCCGCGGGCGTAGGCGTCGAGGTTCGAGACGA 1710893 Query 147110 AAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTC 147168 | ||||| ||| | ||||||||||||||||||||||| |||||| ||||||| Sbjct 1710892 AGAACTGCGCAAAC-ATGTGGCACGGCGGCAGCGCCATCAGTTCGAGGTCCTTGGGGTTC 1710834 Query 147169 CAGGCCGAGACCACCAGCCGCCTGCTCTCGG---GGTTCCTCTTAATCTCTTCGATAACC 147225 ||||| || || | || | | |||| |||| |||| |||| ||||| Sbjct 1710833 CAGGCGCTGAGCAGGATGCGACGG---TCGGTAGGGTTGTTCTTGATCTTGTCGAT---- 1710781 Query 147226 CACCTCAGC----TGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCT 147281 ||| | ||| || || ||||| || || |||||| || |||| || |||| Sbjct 1710780 CACTTGAGCGAGTTGATCGACGCCTTGACCGGTGTAGTTGGTATCGCAATCTGTGTACTC 1710721 Query 147282 GGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTG 147341 || |||||||| | ||| ||||| ||||| || || |||| |||||| |||| || Sbjct 1710720 TGCGCCAAAGTGTCGCCATTGGAAACCGTAGACGGGGCCCAAGTCGCC-----TTCTCTG 1710666 Query 147342 CG---AGA-AGCCCGCCCGCTT-GAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCC 147396 || ||| ||||||| || | ||| || || | || |||| | ||||||||||| Sbjct 1710665 CGGTGAGACAGCCCGCGCGAGTCGAGGAATTCACGCGATCCGTTGCCGTCCCAGATGTGT 1710606 Query 147397 ACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCC 147456 || ||||| | | |||| || || || || ||| | |||||||| |||||| Sbjct 1710605 ACGCCCTTATCTGTGAGCAGTTTCGAATCGGTCTTGCCAGCAACAAACCAGAGGAGCTCC 1710546 Query 147457 TCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAA 147503 || | || || | ||||||| | ||||||||| ||||| || || Sbjct 1710545 TCGAGCACGCCACGGAAAAAGACACGCTTGGTGGTGAGCAGAGGCAA 1710499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583487803072800