Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05-
20] 27 sequences; 20,067,589 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq11 114 1e-20
seq17 104 2e-17
>seq11
Length=790822
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 35534 TGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGC 35593
|| ||||| |||||||| ||||||||||| |||| | || || |||| || ||||||
Sbjct 631940 TGCAACGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGGCCGTCCTCGAGCTGC 631881
Query 35594 TTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTT 35653
||||| || || || | ||||||||||| | || | | |||||||||| ||||||
Sbjct 631880 TTACCAGCGAAAATGAGTCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGGATCTTG 631821
Query 35654 TGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTC 35713
|||| | | | | |||||| || || ||||||| |||||||| || || ||
Sbjct 631820 GCTTTCACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGTGTGATCGTCTTTCCTGTG 631761
Query 35714 AAAGTTTTCACAAATATCTGCAT 35736
| || || || || ||||||||
Sbjct 631760 AGCGTCTTGACGAAAATCTGCAT 631738
Score = 111 bits (122), Expect = 1e-19
Identities = 142/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || ||||||||||||| | ||| || |||| || |||||||| || |||||
Sbjct 631701 CTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAA 631642
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | |||||||| || | || | | ||||||||| ||||| ||| | ||
Sbjct 631641 GATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGAATCTTGGCCTTGA-CGT 631583
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | |||||| || |||||||| | |||||||| ||||| |||| ||| || |
Sbjct 631582 TGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTACCGGTCAGAGTCTTGA 631523
Query 35724 CAAATATCTGCAT 35736
|||| ||||||||
Sbjct 631522 CAAAGATCTGCAT 631510
Score = 104 bits (114), Expect = 2e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 35534 TGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGC 35593
|| || || |||||||| ||||||||||| || | | || || | || |||||||||
Sbjct 632168 TGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGACCATCCTCCAGCTGC 632109
Query 35594 TTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTT 35653
||||| ||||| ||||| ||||||||||| | ||| | | |||||||||| ||||||
Sbjct 632108 TTACCAGCAAAGATCAAGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTG 632049
Query 35654 TGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712
||| | |||| | | || || || || || || | ||| || || || |||||
Sbjct 632048 GCCTTGA-CGTTGTCAATAGTATCCGAGGACTCGACATCGAGCGTAATGGTCTTGCCCGT 631990
Query 35713 CAAAGTTTTCACAAATATCTGCAT 35736
| || || ||||| || |||||
Sbjct 631989 GAGCGTCTTGACAAAGATTTGCAT 631966
>seq17
Length=605135
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||||| || | || |||||| || |||||||| || |
Sbjct 300015 CCACCACGCAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 300074
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| | |||| || ||||||||||| || || |||| ||||||||||| | ||
Sbjct 300075 AGGGTGTGGCCGTCCTCAAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 300134
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || |||||||||| |||||| ||| | | | | | ||||| || || |||
Sbjct 300135 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACC 300194
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | ||||| || |||||||| | || || || || ||||||||
Sbjct 300195 TCGAGAGTGATGGTCTTACCCGTGAGGGTCTTAACGAAGATCTGCAT 300241
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450793447857160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |