Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq19 201 1e-46 seq8 93.3 5e-14 >seq19 Length=580969 Score = 201 bits (222), Expect = 1e-46 Identities = 905/1419 (64%), Gaps = 30/1419 (2%) Strand=Plus/Plus Query 110681 AACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCA 110740 |||||||| ||||| | | | ||||||||| | ||||| || || ||||| || Sbjct 519571 AACTCACCGGCGAGCACACGACGCGAGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCG 519630 Query 110741 TTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTA 110800 || || | ||| || ||| ||||| || ||||| || || | || ||| ||| Sbjct 519631 TTGAAGCCGAGGATCTGACTGGTCGAGGCGGTGGGCATGGGAGCGAGCAGAAGCGAGTTG 519690 Query 110801 CGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTT 110860 || ||||| | || ||| ||||||| | ||||||| || | | || Sbjct 519691 CGCAGACCGTGCTTGGCGATCTTGGCCTTGAGCTCGGCCCAGTCCCAGAGGTCCGAGGGG 519750 Query 110861 -TCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGT 110919 | || |||||||||| |||| ||| | || || || ||||| || || | |||| Sbjct 519751 GTGACG--CCCACATGTCGTACTGCAGCTCACCCTGCGAAGCGGGCGAGCCGGCGTAGGT 519808 Query 110920 TTCATAGGAACCTTGGGCTTCAGCCAATTCACA-GCTCGCCTCCAGGGATGCGTGATACA 110978 || |||| || || | ||||| || || | |||| || || | ||||| || | Sbjct 519809 CTCGTAGGTGCCGTGCTGCTGAGCCAGCTCGCACGATCGC-TCGAGAGCGGCGTGGTAGA 519867 Query 110979 TGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGC 111038 |||| || |||||| | | || | || || || ||||| ||||||| Sbjct 519868 TGGTCTCGAAGATATGCACGTTGAGACGACGAGCCTCGGGAGACTCAAAGGCGTAGCCCA 519927 Query 111039 ACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATAT 111098 | || || | || || ||||| || ||||| | ||| || || | ||| ||||| | Sbjct 519928 TGATCATGAAGGCGTCGGCAAGACCCTGGACACCGATACCGATGGGACGGTGGCGCATGT 519987 Query 111099 TAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTT 111158 | || || || ||| ||||| || | || |||| |||| ||| || || | Sbjct 519988 TGGATCGACGGGCCTCCTCGACGGGGTAGTAGTTGATGTCGATGATCTTGTTAAGGTTCT 520047 Query 111159 TGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGT----GCGAGTCTCT 111214 || | ||| | || || || || || | || | || |||| | Sbjct 520048 TGCAGATGGCCTTGGCGACCTCGTGCAGACGTTTGAAGTCGTACGTCTTGGCGACGGGGT 520107 Query 111215 TCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTA 111274 || || | | || |||||||| || ||||| ||||| |||||| ||| || Sbjct 520108 CGAT-GA---AGGTGGGGAGGGCGATCGAGGCCAAGTTGCAGACAGCCACCTCGTCGGGG 520163 Query 111275 TCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTT 111334 | ||||||| | ||| || || || |||||||| | ||| || || || | ||||| Sbjct 520164 GCGCTGTACTCGATAATCTCGGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGTTCTTC 520223 Query 111335 TGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTC 111394 ||||| ||||| ||| |||||||||||||| ||| |||| | || ||||| ||| Sbjct 520224 TGGTTGCTCTTGCGGTTAGCGGCATCCTTGTAGAGGATGAAGGGGTTGCCGGTCTCGGTC 520283 Query 111395 TGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCC 111453 || || | ||| || || | ||| | | || | | || | || || ||||| || || Sbjct 520284 TGCGACTCGAGGATGGCGTACCAGAGCTTCTGGGCCTTG-ACGGTGCGCTTGGCACGGCC 520342 Query 111454 CTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACC 111513 ||| |||||||| ||||||| |||||||| || || ||| | ||| || Sbjct 520343 CTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCGCCGTAGCAGTCAGCGAGGCC 520402 Query 111514 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAA 111573 || || || || || | || ||||| | || | ||| |||| ||||||||| Sbjct 520403 GGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAA 520462 Query 111574 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTG 111633 || || || | ||| || | | ||||| |||| || |||| || | || || Sbjct 520463 GAGATCGGGCACCCAGAGTGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCCTTGCCGTG 520522 Query 111634 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 111693 ||| || | || |||||||| | || |||| |||||||||||||| || | || Sbjct 520523 GTTCTTGCGGAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGCTCAACGTAAATGGC 520582 Query 111694 GATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 111747 | | || ||||| ||| | || | || ||||| || ||| ||| || Sbjct 520583 AAAGGCACC---GGGACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCGGTGTTGTTGAA 520639 Query 111748 TACGCGAAGCATTGGAATAATACCAT--CTGATTGACCATTTGTCCCCCGAATACGAGAT 111805 ||||| ||||| || | ||||| | |||| ||| || || || ||| || Sbjct 520640 GACGCGGAGCATGGGCACGATACCGTTGCTGA--CACCGTTGGTACCGGCAATGTAGGAA 520697 Query 111806 TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGC 111865 || | | | ||||||| | || ||||| || || ||| ||||| Sbjct 520698 CCGGTGCCGCGGATGCAGTGGATGTTGAGGCCGATACCACCGGCGGTCTTGGAGATCATG 520757 Query 111866 GCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGG 111925 |||||| | | || || | ||||| || | ||| ||||| ||||| ||| || ||| Sbjct 520758 GCACACGTCTTGAGCGTGTCGTAGATGCCATCGATCGAGTCGTCCTTCATGGTGACGAGG 520817 Query 111926 AAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGA 111985 ||||| || | ||| || || ||||| || ||||||||||| || | ||||| Sbjct 520818 AAGCACGACGAGAGCTGAGGGTGCGGGGTACCTGCGTTGAAGAGGGTGGGGGAGGCGTGT 520877 Query 111986 ATGAACATAC-CTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCC 112044 | || ||| ||| ||||| || ||| ||||| | | | || ||||| | || Sbjct 520878 GT-AAAGTACTTTTGCGACATGAGGTTGTAGGTCTCAATGGCGCTCTCGATGTCCTGGCC 520936 Query 112045 GTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 |||||| |||| ||||| ||||||| ||||| ||| || Sbjct 520937 GTGGATACCGACGGCGACACGCATGAGCATGTGCTGGGG 520975 >seq8 Length=837966 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| ||||| || || || || || || || || |||||| ||||| Sbjct 244928 GGCAAAGTCGGTGTGCAGACCTTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGACC 244869 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| |||||||| | ||| | || | | ||| || |||||||||||||| Sbjct 244868 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGAT 244809 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816 || || || ||||| || | || || |||||||| Sbjct 244808 GCCTTCAACGGCGGCAAAGGCGACGAGACGCTCGGCGAA 244770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031788039200