Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq19 194 2e-44 seq13 131 2e-25 seq8 107 2e-18 >seq19 Length=580969 Score = 194 bits (214), Expect = 2e-44 Identities = 905/1418 (64%), Gaps = 28/1418 (2%) Strand=Plus/Plus Query 118155 AACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCA 118214 |||||||| ||||| || | | ||||| |||| |||||| ||||| |||||||| Sbjct 519571 AACTCACCGGCGAGCACACGACGCGAGTAGATGTTGGACGTGTAAGGCTCGAAGCACTCG 519630 Query 118215 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTA 118274 ||| || | ||| || || ||||| ||||||||||| || | ||||| ||| Sbjct 519631 TTGAAGCCGAGGATCTGACTGGTCGAGGCGGTGGGCATGGGAGCGAGCAGAAGCGAGTTG 519690 Query 118275 CGGAGACC---CTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTT 118331 || ||||| ||| | | || ||||||| || ||||||| || | | Sbjct 519691 CGCAGACCGTGCTTGGCGATCTTGG---CCTTGAGCTCGGCCCAGTCCCAGAGGTCCGAG 519747 Query 118332 GTC-TCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAA 118390 | | | | |||||| || |||| || ||| || || || ||||| || | | Sbjct 519748 GGGGTGACGC--CCACATGTCGTACTGCAGCTCACCCTGCGAAGCGGGCGAGCCGGCGTA 519805 Query 118391 TGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGA-GCTCGCCTCGAGGGCTGCGTGAT 118449 ||||| || | ||| | || |||| ||| | | |||| ||||| || ||||| | Sbjct 519806 GGTCTCGTAGGTGCCGTGCTGCTGAGCCAGCTCGCACGATCGC-TCGAGAGCGGCGTGGT 519864 Query 118450 ACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCG-AGT 118508 | || || || || || | | || | |||||| || ||||| ||| || Sbjct 519865 AGATGGTCTCGAAGATATGCACGTTGAGACGACGAGCCTCGGGAGACTCAAAGGCGTAGC 519924 Query 118509 CGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCT 118567 | || | || || | || || ||||| |||||||||| || || || || || | Sbjct 519925 C--CATGATCATGAAGGCGTCGGCAAGACCCTGGACACCGATACCGATGGGACGGTGGCG 519982 Query 118568 CATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAG 118627 ||| || || || || ||| ||||| || | || | ||||| | | | || || Sbjct 519983 CATGTTGGATCGACGGGCCTCCTCGACGGGGTAGTAGTTGATGTCGATGATCTTGTTAAG 520042 Query 118628 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAA--CTGCGAGTC 118685 || ||| || |||| | || || || || || | | || | || | | | Sbjct 520043 GTTCTTGCAGATGGCCTTGGCGACCTCGTGCAGACGTTTGAAGTCGTACGTCTTGGCGAC 520102 Query 118686 TCT-TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATC 118744 || ||| | | || |||||||| || |||| || || |||| ||| || Sbjct 520103 GGGGTCGATGA---AGGTGGGGAGGGCGATCGAGGCCAAGTTGCAGACAGCCACCTCGTC 520159 Query 118745 CTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTT 118804 | ||||||| ||||| || ||||||||||| || | ||| |||||||| | ||| Sbjct 520160 GGGGGCGCTGTACTCGATAATCTCGGTGCACAAGTTGGAGCACTTGATGGTGCCGAGGTT 520219 Query 118805 CTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTC 118864 ||| || || ||| |||| ||||||||||| || ||| | || | || ||||| Sbjct 520220 CTTCTGGTTGCTCTTGCGGTTAGCGGCATCCTTGTAGAGGATGAAGGGGTTGCCGGTCTC 520279 Query 118865 CGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTC 118923 || || |||| ||| || || | ||||| | || | || | || ||| ||||| | Sbjct 520280 GGTCTGCGACTCGAGGATGGCGTACCAGAGCTTCTGGGCCTTG-ACGGTGCGCTTGGCAC 520338 Query 118924 GCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGA 118983 | ||||| ||||||| ||||||| |||||||| || || | || | || Sbjct 520339 GGCCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCGCCGTAGCAGTCAGCGA 520398 Query 118984 GCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCA 119043 | || || || | ||||| | ||| ||||| | || || ||| |||| ||||| Sbjct 520399 GGCCGGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCA 520458 Query 119044 TGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCC 119103 ||||||| || || | |||||| || ||||||| || || || | || || | | Sbjct 520459 TGAAGAGATCGGGCACCCAGAGTGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCCTTGC 520518 Query 119104 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 119163 | || || || | || | || || | || |||| |||||| || || | ||| | Sbjct 520519 CGTGGTTCTTGCGGAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGCTCAACGTAAA 520578 Query 119164 CCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAA 119220 || | | || ||| ||| |||||| || || | || ||| ||| | Sbjct 520579 TGGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGGGCGGTGTTGTTGA 520638 Query 119221 ATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACT 119280 | || || ||||| || | |||||| | | || || || || ||| || Sbjct 520639 AGACGCGGAGCATGGGCACGATACCGTTGCTGACACCGTTGGTACCGGCAATGTAGGAAC 520698 Query 119281 TATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCG 119340 || | | || |||||||| | || ||||| || || ||| ||||| | Sbjct 520699 CGGTGCCGCGGATGCAGTGGATGTTGAGGCCGATACCACCGGCGGTCTTGGAGATCATGG 520758 Query 119341 CGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGA 119400 | ||| | |||| || ||||||| |||||||||||||| |||| | | || ||||| Sbjct 520759 CACACGTCTTGAGCGTGTCGTAGATGCCATCGATCGAGTCGTCCTTCATGGTGACGAGGA 520818 Query 119401 AGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGA 119460 |||| ||| | ||||| || ||||| ||||||||||| || || | ||||| Sbjct 520819 AGCACGACGAGAGCTGAGGGTGCGGGGTACCTGCGTTGAAGAGGGTGGGGGAGGCGTGTG 520878 Query 119461 TGAACATAC-CTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCG 119519 | || ||| ||| ||||| || ||||||||| | | || ||||| | ||| Sbjct 520879 T-AAAGTACTTTTGCGACATGAGGTTGTAGGTCTCAATGGCGCTCTCGATGTCCTGGCCG 520937 Query 119520 TGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557 || ||||||| | ||| ||||| | ||||| ||||| Sbjct 520938 TGGATACCGACGGCGACACGCATGAGCATGTGCTGGGG 520975 >seq13 Length=681008 Score = 131 bits (144), Expect = 2e-25 Identities = 225/327 (69%), Gaps = 0/327 (0%) Strand=Plus/Plus Query 179733 CTTGAGGAGCGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGA 179792 ||| || ||||| || | |||| || || | |||| |||||||||||| ||||| || Sbjct 284151 CTTTAGCAGCGAAGGGTAAAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATGTGCGA 284210 Query 179793 ACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAACATC 179852 ||| |||| |||| ||| ||||| | ||| | | || || || || | || || Sbjct 284211 ACCGTCGTGATCCTGATCGGTCATGACCATGATGCTGCCGTATCGCAGACTGTTCACGTC 284270 Query 179853 TTGATAATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTT 179912 |||| | ||| || || || ||||||||||||| ||||| | |||| ||| ||| Sbjct 284271 AAGATACTGCTTGCCGTGCTGCAGACCCAAGATCTCCTTGATGGCCTTGATCTCGGCGTT 284330 Query 179913 TGATGTGAGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAA 179972 ||| || | || || || ||||| || ||| |||||||| ||||| Sbjct 284331 CTTCATGATCTGATCGTGAGAGGCTTCACGGACGTTCAAGAGCTTACCACGGAGCGGGAA 284390 Query 179973 CACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGA 180032 ||||||||||| || | || ||| | || |||||| || ||||| | ||| || || Sbjct 284391 CACACCGTAGTTGTCTCTTCCGACCTCGACGATACCAGCGACGGCGAGCGACTTGGCCGA 284450 Query 180033 ATCACCCTCCGTCACGATGAGCGTACA 180059 ||||| || || | ||||||||| || Sbjct 284451 GTCACCTTCGGTGAGGATGAGCGTGCA 284477 >seq8 Length=837966 Score = 107 bits (118), Expect = 2e-18 Identities = 173/245 (71%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| ||||| ||||| || |||||||| || || |||||| ||||| Sbjct 244928 GGCAAAGTCGGTGTGCAGACCTTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGACC 244869 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||||||| |||||||| | |||||| || | || ||||| ||||||||||| Sbjct 244868 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGAT 244809 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGGGACTTTGTATC-A 130192 || || || || || || | ||||||||| || |||| ||| | |||| | Sbjct 244808 GCCTTCAACGGCGGCAAAGGCGACGAGACGCTCGGCGAAAGTGGCGCG--CTTGTCGCTG 244751 Query 130193 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCA 130252 | ||| || |||||| | || || | || || |||| ||||| || || ||| Sbjct 244750 ATCCATCGCAGCGCCCAGTCGGCTTTCTGCTTGACGACGGGGATGGTCTCGACGGCGTCA 244691 Query 130253 AAGAG 130257 ||||| Sbjct 244690 AAGAG 244686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434991278120