Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05-
20] 27 sequences; 20,067,589 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq15 196 1e-44
seq11 129 2e-24
seq1 100 9e-16
>seq15
Length=634981
Score = 196 bits (216), Expect = 1e-44
Identities = 590/904 (65%), Gaps = 13/904 (1%)
Strand=Plus/Plus
Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258
|| || || |||||| | |||||||| || || |||||||| || |||||||| || |||
Sbjct 461224 GCCATCGGTATCGATCTTGGTACTACCTACTCGTGTGTTGCCGTCTGGCAAAACGACCGT 461283
Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318
|| || | ||||| || || || |||||| | || || || ||||| || || || |||
Sbjct 461284 GTCGAGGTCATTGCCAACGACCAGGGTAACCGCACCACTCCCTCATATGTCGCCTTCACC 461343
Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378
|| | |||||| | || ||||| |||| || || || | ||| || || | ||
Sbjct 461344 GACTCGGAGCGTCTCATCGGTGACGCTGCCAAGAACCAGGTCGCTATGAACCCCCACAAC 461403
Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTC--TGACAAATCTACACAA 349435
|| || || || || ||||| || |||||| | ||||| | || | | | ||
Sbjct 461404 ACCGTCTTCGACGCCAAGCGTCTCATTGGTCGCAAGTTCGACGATGCCGAGGTT---CAG 461460
Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495
|| || | || || | ||||| || || | | ||||| || || ||
Sbjct 461461 TCCGACATGAAGCACTGGCCTTTCGAGGTCGTCACG---GTCGGTGGCAAGCCTCAGATC 461517
Query 349496 GAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTT 349555
| || || || ||||| | || || |||||||| || || || ||||||
Sbjct 461518 CGTATCGAGTACAAGGGTGAGAAGAAGACCTTCACCCCCGAAGAGATCTCGTCGATGGTT 461577
Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615
| | || ||| || | || || || || | |||| || || | ||||| ||
Sbjct 461578 CTCCTCAAGATGCGCGAGACCGCCGAGGCCTACCTCGGTGGCACCGTCAAGGATGCCGTC 461637
Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675
| || || || ||||| || || || | |||||| || || || ||||| || | |
Sbjct 461638 GTCACCGTCCCTGCCTACTTCAACGACTCGCAGCGTCAGGCCACCAAGGATGCCGGTATC 461697
Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735
|| |||| | || || | |||| || || || ||||| || || || || || ||
Sbjct 461698 ATCTCGGGCCTCAACGTGATGCGAATCATCAACGAGCCCACCGCCGCCGCCATCGCTTAC 461757
Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795
|| || || || | || ||| || | || |||| || || || || |||||||||
Sbjct 461758 GGTCTCGACAAGAAGACTGAGGGCGAGAGGAACGTTCTCATCTTCGACTTGGGTGGTGGT 461817
Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855
|| || ||||| || || || || | || ||||| || || || || || || |||||
Sbjct 461818 ACCTTCGATGTCTCGCTCCTCACCATCGAGGAGGGTATCTTCGAGGTCAAGGCCACTGCC 461877
Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915
||||| || || | ||||| || || || || || |||||||| || || || |
Sbjct 461878 GGTGACACCCACTTGGGTGGTGAGGACTTCGACAACCGTCTCGTCAACCACTTCGTCCAG 461937
Query 349916 GAATTTAAGCGTCAAGCTAAAATTGATATTGGAGAT--AATCCTAGAGCAATGCGTCGCC 349973
|| || ||||| |||| | || | | || | || | | || | ||||| |
Sbjct 461938 GAGTTCAAGCG-CAAG-AACAAGAAGGACTTGACCTCCAACGCCCGTGCCCTCCGTCGTC 461995
Query 349974 TAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTG 350033
| | || || ||||| ||||| ||||| || | || || || |||| ||| | || |
Sbjct 461996 TCCGCACCGCCTGTGAGCGTGCCAAGCGCACCCTCTCGTCGGCTGCCCAGACCACCATCG 462055
Query 350034 AAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTG 350093
| ||||| ||||| || |||| || |||| | || || || |||||||| || |
Sbjct 462056 AGATTGACTCTCTCTTCGAGGGCATCGACTTCTACACCTCGATCACCCGTGCTCGTTTCG 462115
Query 350094 AAGA 350097
| ||
Sbjct 462116 AGGA 462119
>seq11
Length=790822
Score = 129 bits (142), Expect = 2e-24
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || || || || || ||||| || || || || |||||
Sbjct 631740 CATACCACCACGGAGACGGAGGACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATC 631681
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || || ||||| || || || |||||||| ||||| |||||||||||
Sbjct 631680 GGAAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGG 631621
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || || ||||| || || || || || || || | || || | ||
Sbjct 631620 TGGGATACCCTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCGATAGTGTCGGAAGACTC 631561
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || | ||||| ||||| || || || ||||| ||||||||
Sbjct 631560 CACCTCGAGGGTGATCGTCTTACCGGTCAGAGTCTTGACAAAGATCTGCAT 631510
Score = 122 bits (134), Expect = 3e-22
Identities = 168/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||| || || |||| || ||||| || | || ||| || ||||| || |
Sbjct 631972 TTTGCATACCTCCGCGCAATCGAAGGACAAGGTGCAACGTGCTCTCCTTCTGAATGTTGT 631913
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || || || || || || || ||||| || || || || ||||| |
Sbjct 631912 AGTCGGAGAGAGTACGGCCGTCCTCGAGCTGCTTACCAGCGAAAATGAGTCGCTGCTGGT 631853
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
|||| || || || || || ||||| || || ||||| ||||| || |||| || || |
Sbjct 631852 CAGGCGGGATACCCTCCTTGTCCTGGATCTTGGCTTTCACATTGTCGATCGTGTCCGAAG 631793
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || ||||| | |||||||| || || || || || |||||||||||
Sbjct 631792 ACTCGACCTCCAGTGTGATCGTCTTTCCTGTGAGCGTCTTGACGAAAATCTGCAT 631738
Score = 104 bits (114), Expect = 7e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 140546 CTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605
||| || ||||| || || || || | || || ||||| || || || || ||||||||
Sbjct 632157 CTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGACCATCCTCCAGCTGCTTACCAGCAAA 632098
Query 140606 GATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATT 140665
||| | || ||||| || ||||| || || || || ||||| || || || || || ||
Sbjct 632097 GATCAAGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 632038
Query 140666 ATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
||||| | ||| || | || || || || |||| ||||| || || || || || ||
Sbjct 632037 GTCAATAGTATCCGAGGACTCGACATCGAGCGTAATGGTCTTGCCCGTGAGCGTCTTGAC 631978
Query 140726 AAAAATCTGCAT 140737
||| || |||||
Sbjct 631977 AAAGATTTGCAT 631966
>seq1
Length=2009762
Score = 100 bits (110), Expect = 9e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567
||||||||||| | | || ||||| || ||||| ||||| || || || || || ||
Sbjct 1808610 ATACCACCACGCAGACGGAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCC 1808551
Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627
|| | || || || || || || || || || || ||||| || || ||||| |||||
Sbjct 1808550 GAAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGG 1808491
Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687
|| || || || || |||||||| || || || ||||| | || | || || | ||
Sbjct 1808490 GGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTTGATGGTGTCCGAGGACTCC 1808431
Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| || || |||| ||||| || ||| ||
Sbjct 1808430 ACCTCGAGGGTAATGGTCTTACCTGTTGGT 1808401
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515253875816681
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |