Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq19 367 1e-96 seq8 107 2e-18 seq13 100 3e-16 >seq19 Length=580969 Score = 367 bits (406), Expect = 1e-96 Identities = 544/763 (71%), Gaps = 6/763 (1%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| |||||| | ||||||||||| | ||| | | | | | |||||| ||| Sbjct 520962 TCATGCGTGTCGCCGTCGGTATCCACGGCCAGGACATCGAGAGCGCCATTGAGACCTACA 520903 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| |||||||||||||| |||||| | || ||||| |||||||| ||||| Sbjct 520902 ACCTCATGTCGCAAAAGTACTTTACACACGCCTCCCCCACCCTCTTCAACGCAGGTACCC 520843 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 ||||||||| | ||| |||||||| || | |||||||| ||||||||||| |||| Sbjct 520842 CGCACCCTCAGCTCTCGTCGTGCTTCCTCGTCACCATGAAGGACGACTCGATCGATGGCA 520783 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| ||||||||| ||||||| ||||||||| | ||||||||||| || Sbjct 520782 TCTACGACACGCTCAAGACGTGTGCCATGATCTCCAAGACCGCCGGTGGTATCGGCCTCA 520723 Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 || | | |||| | | ||| | || || || ||||| ||| | | | Sbjct 520722 ACATCCACTGCATCCGCGGCACCGGTTCCTACATTGCCGGTACCAACGGTGTCAGCAACG 520663 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | |||||||| ||||||||||||||||||||||| ||||| |||||| |||||||||| Sbjct 520662 GTATCGTGCCCATGCTCCGCGTCTTCAACAACACCGCCCGCTACGTCGACCAGGGTGGCA 520603 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | || ||||| ||| | ||||| |||||| | ||| | | |||| Sbjct 520602 ACAAGCGTCCCGGTGCCTTTGCCATTTACGTTGAGCCATGGCACTCGGACGTCTTTGAGT 520543 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACA 53671 | ||||| || || ||| || || | || ||| |||| ||| || || || ||| Sbjct 520542 TCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTGCGTGCCCGAGAGCTCTTCTAC- 520484 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731 || || ||| | || || ||||||||| | | ||| ||| || ||| || |||| || Sbjct 520483 GCACTCTGGGTGCCCGATCTCTTCATGAAGAGGGTCGAGCAGAACGGCGACTGGTCGCTC 520424 Query 53732 ATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790 |||||||| |||||||||||||||||| | | || |||||| || |||||| | | Sbjct 520423 ATGTGCCCCAACGAGTGCCCCGGCCTCGCTGACTG-CTACGGCGACGAGTTTGAGCGCCT 520365 Query 53791 GTATCGGACG-TACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTAT 53849 || || || |||| | ||||||| |||| | |||||||| | || | | Sbjct 520364 CTA-CGAGCGCTACGAGGCCGAGGGCCGTGCCAAGCGCACCGTCAAGGCCCAGAAGCTCT 520306 Query 53850 GGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATT 53909 || | || |||||| || ||| ||||| || | || | ||| |||||||||| Sbjct 520305 GGTACGCCATCCTCGAGTCGCAGACCGAGACCGGCAACCCCTTCATCCTCTACAAGGATG 520246 Query 53910 CGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAA 53952 | | ||| |||||||||||||||||| ||||| |||||| Sbjct 520245 CCGCTAACCGCAAGAGCAACCAGAAGAACCTCGGCACCATCAA 520203 Score = 149 bits (164), Expect = 7e-31 Identities = 529/811 (65%), Gaps = 37/811 (5%) Strand=Plus/Minus Query 55138 GAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAA 55197 |||||| ||| | ||||||||| || |||||||| || | ||| || ||||| Sbjct 520046 GAACCTTAACAAGATCATCGACATCAACTACTACCCCGTCGAGGAGGCCCGTCGATCCAA 519987 Query 55198 CCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCT 55257 | | || ||||| ||||||| |||||||| ||||| | |||||| ||||||||| | Sbjct 519986 CATGCGCCACCGTCCCATCGGTATCGGTGTCCAGGGTCTTGCCGACGCCTTCATGATCAT 519927 Query 55258 CGGATTGCCCTTCGACTCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCA 55316 || | |||| || || ||||| | ||| | | |||||| || | || Sbjct 519926 GGGCTACGCCTTTGAGTCTCCCGAGGCTCGTCGTCTCAACGTGCATATCTTCGAGAC-CA 519868 Query 55317 TCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTATG-AGCGAGGGGACCTACGAG 55375 ||||| || || |||||| ||||| | |||||| | ||| | || ||||||||| Sbjct 519867 TCTACCACGCCGCTCTCGAGCGATCGTGCGAGCTGGCTCAGCAGC-ACGGCACCTACGAG 519809 Query 55376 ACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGG-----CA 55430 || | | | ||||| ||| |||| || |||| ||| | |||| | Sbjct 519808 ACCTACGCCGGCTCGCCCGCTTCGCAGGGTGAGCTGCAGTACGACATGTGGGCGTCACCC 519749 Query 55431 AGTCTGACCCCATG---TTTGACAAGTTGAAGCATGACATTCACTTGTGGGGCCTACGCA 55487 || |||| | | | | | || | ||| | || | | || || |||| Sbjct 519748 CCTCGGACCTCTGGGACTGGGCCGAGCTCAAGGCCAAGATCGCCAAGCACGGTCTGCGCA 519689 Query 55488 ACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACG 55547 |||| || || | || || ||||| ||||| ||||| ||||||| | ||| ||||| Sbjct 519688 ACTCGCTTCTGCTCGCTCCCATGCCCACCGCCTCGACCAGTCAGATCCTCGGCTTCAACG 519629 Query 55548 AGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTG 55607 || |||||||| |||||| ||||||||||| ||| || || || |||||||| Sbjct 519628 AGTGCTTCGAGCCTTACACGTCCAACATCTACTCGCGTCGTGTGCTCGCCGGTGAGTTCC 519569 Query 55608 TCATGATCAACAA---GCACCTCGTCAAGGACCTGCAGAAGA-TCAACAAGTGGAACCCG 55663 || | ||| | ||| | || | | || || || ||||||| Sbjct 519568 AGGTGGTGAACCCTTGGTTGCTCCGCGAGCTCGTCGAGCAGGGTCT----GTGGAACGAC 519513 Query 55664 CAGATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTG---GAGATT 55717 ||| |||| || || || | | |||| || ||| ||||||| || | || Sbjct 519512 ACGATGAAGAACCGCATCATCGCTC---ACGGCGGTTCCATCCAGAACGTGCCCGGCATC 519456 Query 55718 CCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATT 55777 || || ||||| || | ||| ||| || |||||||| |||||| | || Sbjct 519455 CCCGACCGCATCAAGAAGCTCTACAAGACCGTCTGGGAGATCAGCCAGAAGGCCATCATC 519396 Query 55778 GACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACAT---CTTC 55834 |||||| || || |||||||| | |||| |||||| ||||| || ||||| | || Sbjct 519395 GACATGGCCGCCGACCGTGGTGCTTTCATCTGCCAGTCGCAGTCGCTCAACATTCACCTC 519336 Query 55835 ATGGAGAAT-CCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGG 55893 || | | |||| |||||| | | | |||||||||||| ||||| ||||||||||| Sbjct 519335 TCGGCGCCTACCTT---TGGCCA-GCTCACCTCGATGCACTTCTACGGCTGGAAGAAGGG 519280 Query 55894 ACTCAAGACGGGTATGTACTATCTGCGGACC 55924 |||||||| |||| ||||| ||||| ||| Sbjct 519279 TCTCAAGACCGGTACCTACTACCTGCGTACC 519249 >seq8 Length=837966 Score = 107 bits (118), Expect = 2e-18 Identities = 328/498 (66%), Gaps = 22/498 (4%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || || ||||| || || |||||||| | ||| ||||||| |||||| || |||| Sbjct 244873 AGACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAG 244814 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC 74924 ||||||||||| || ||||||||||| || || | ||||| ||| || ||| Sbjct 244813 AAGATGCCTTCAACGGCGGCAAAGGCGACGAGACGCTCGGCGAA-AGTGGCGCGCTTGTC 244755 Query 74925 ----ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGC 74980 ||||| | | ||||| || ||||| | ||||| | |||| || |||| || Sbjct 244754 GCTGATCCATCGCAGCGCCCAGTCGGCTTTCTGCTTGACGACGGGGATGGTCTCGACGGC 244695 Query 74981 TTGGAAGAG--GCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAG 75038 | ||||| ||| || || ||||| || | | |||| || | || ||| Sbjct 244694 GTCAAAGAGGAGCTCGC--GCTGCTCGGGCTCGCGAATGTAGGTGTCGATGAGGAGCGAG 244637 Query 75039 TACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCT 75098 || |||||||| || || ||| | | |||| | ||||||| | || ||||| Sbjct 244636 TAGGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCG 244577 Query 75099 GCAATCTGTACATC--CTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCG 75156 || || || || ||||| || | ||| ||||| ||||||| ||||| | Sbjct 244576 GCGGCTTGCACCTCGGAGCTGAAACGCTC--GACGAGGTTCTCGTTGACGATACCGTCGG 244519 Query 75157 AGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAG---TT 75213 | |||||||| || || || || |||||||||||| || | ||| |||| | Sbjct 244518 AAGCGGCGAAGAAGGCGAGGACGTGCGAGATAAAGTGGCGTTCGTTGTCGTTGAGCTTGT 244459 Query 75214 TGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA--ACTCCC 75271 ||||||| || | || ||| | | || ||||| ||| | |||||||| | || Sbjct 244458 TGTCCCAGTCGTGGAGATCCTTGGAAAGGTCGATCTCTTCGGCGGTCCAGAAGGAAGCC- 244400 Query 75272 AATC-GCCTTTTTGTACA 75288 || ||||||||||||| Sbjct 244399 --TCGGCCTTTTTGTACA 244384 >seq13 Length=681008 Score = 100 bits (110), Expect = 3e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGTT 119142 |||||| |||||||||||||| ||||||| ||||||||| || ||| | ||||| Sbjct 285384 GTTGGCGAGCTTGGCACCGTAACCGTTCCTACCACCGGTGACCTTGGCCTCGTTGTCGTC 285443 Query 119143 GTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 ||||||||| ||| | ||||| |||||||||||||||||||| Sbjct 285444 GTAGTTGGACGAGGTGAGGAGGTGACCAAAGATGAGCTCGGGGAT 285488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215815314600