Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1 141 8e-29 >seq1 Length=2009762 Score = 141 bits (156), Expect = 8e-29 Identities = 431/659 (65%), Gaps = 44/659 (7%) Strand=Plus/Minus Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897 |||| ||||| || || ||||| | ||| ||||| |||||| |||| |||| || Sbjct 1711150 TGGGGAAGGGCAGAGGATCTCTCTCCAACTGCACCTTCAACGGTTCTACGTGATCCTTGT 1711091 Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 ||||||| || || |||| | | | || || ||| ||||| |||| || | | Sbjct 1711090 AGACGTGCGCATCGCCCATGGCGAGCACCAATTCTTTAGGTTCGCAATCGGTCACCTTGG 1711031 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017 | |||||||| || | |||| |||||| || ||||| || || || || | || | | Sbjct 1711030 CGATCATGTAGGTCAACAGAGCGTAGCTAGCAATGTTGAACGGAACGCCCAAACCGAGAT 1710971 Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCT-CT-----CCGTCGC------------ 30059 | | || | |||||| | ||||||||||| | || || |||| Sbjct 1710970 CGCATGAACGCTGGTACATTTGACACGAGAGGTGCTTTTTGCCCTCGCCGCGGGCGTAGG 1710911 Query 30060 --TC----------ACGTAAAACTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGA 30104 || ||| | ||||| | |||| ||||||||| || || ||||| | Sbjct 1710910 CGTCGAGGTTCGAGACGAAGAACTGCGCAAACAT---GTGGCACGGCGGCAGCGCCATCA 1710854 Query 30105 GGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCC 30164 | | | ||| |||||||||||||||| | | |||||| | ||| ||||||||| Sbjct 1710853 GTTCGAGGTCCTTGGGGTTCCAGGCGCTGAGCAGGATGCGACGGTCGGTAGGGTTGTTCT 1710794 Query 30165 TGATGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTC 30223 |||| ||| | | || || || ||||| || || || | ||||| || || Sbjct 1710793 TGATCTTGTCGATCAC-TTGAGCGAGTTGATCGACGCCTTGACCGGTGTAGT-TGGTATC 1710736 Query 30224 -ATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 || ||||||||||| || || || | ||| ||||| ||||| || || |||| ||| Sbjct 1710735 GCAATCTGTGTACTCTGCGCCAAAGTGTCGCCATTGGAAACCGTAGACGGGGCCCAAGTC 1710676 Query 30283 TCCCTCTTCCCTGTGCTCGA-AGCCC-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCG 30340 || ||| | ||| || ||||| | | ||| | || || | || |||||| || Sbjct 1710675 GCCTTCTCTGCGGTG--AGACAGCCCGCGCGAGTCGAGGAATTCACGCGATCCGTTGCCG 1710618 Query 30341 TCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAAC 30400 |||||||| | ||| ||||| || | |||| ||| || | || || || ||| Sbjct 1710617 TCCCAGATGTGTACGCCCTTATCTGTGAGCAGTTTCGAATCGGTCTTGCCAGCAACAAAC 1710558 Query 30401 CACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30459 || || |||||||| | ||| | ||||||| | |||||| ||||| || || || Sbjct 1710557 CAGAGGAGCTCCTCGAGCACGCCACGGAAAAAGACACGCTTGGTGGTGAGCAGAGGCAA 1710499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406310266298484