Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1 134 1e-26 >seq1 Length=2009762 Score = 134 bits (148), Expect = 1e-26 Identities = 364/556 (65%), Gaps = 36/556 (6%) Strand=Plus/Plus Query 34331 ATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAG 34390 |||||||||| |||| || || || || || ||| ||| ||| | | || | | || Sbjct 1710610 ATCTGGGACGGCAACGGATCGCGTGAATTCCTCGACTCGCGCGGGCTGTC-TCACCGCAG 1710668 Query 34391 -GAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCG 34449 || |||||||||||||| |||||||| ||||| ||| |||||||||| || ||||| Sbjct 1710669 AGAAGGCGACTTGGGCCCCGTCTACGGTTTCCAATGGCGACACTTTGGCGCAGAGTACAC 1710728 Query 34450 GGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACAC 34509 | |||| | |||| | || || || | || || || | |||||||||| Sbjct 1710729 AGATTGCGATACCAACTACACCGGTCAAGGCGTCGATCAACTCGCTCAAGTGATCGACAA 1710788 Query 34510 CTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCT 34569 | ||| |||||| ||| | | ||| || | |||| |||||||| ||||| || Sbjct 1710789 GATCAAGAACAACCCTACCGACCGTCGCATCCTGCTCAGCGCCTGGAACCCCAAGGACCT 1710848 Query 34570 CCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGTCGCGAA----- 34623 | ||||||||||| || |||||||||| | ||| || |||| |||| |||| Sbjct 1710849 CGAACTGATGGCGCTGCCGCCGTGCCACA-TGTTTGCGCAGTTCTTCGTCTCGAACCTCG 1710907 Query 34624 -------------TGGGGAG------------CTGTCCTGCCAGCTCTATCAACGATCGG 34658 || ||| || || || || | || || || || Sbjct 1710908 ACGCCTACGCCCGCGGCGAGGGCAAAAAGCACCTCTCGTGTCAAATGTACCAGCGTTCAT 1710967 Query 34659 GAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGA 34718 | || | || || || || ||||||||||||||||| ||||||||| | || ||||||| Sbjct 1710968 GCGATCTCGGTTTGGGCGTTCCGTTCAACATTGCTAGCTACGCTCTGTTGACCTACATGA 1711027 Query 34719 TCGCTCATGTCGTGGGGTTG-GTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCAT 34777 |||| || | | | ||| | ||| || |||||| | |||| |||||||| Sbjct 1711028 TCGC-CAAGGTGACCGATTGCGAACCTAAAGAATTGGTGCTCGCCATGGGCGATGCGCAC 1711086 Query 34778 ATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTC 34837 ||||| | | ||| | || | | | | | ||| || | |||| || | || ||| Sbjct 1711087 GTCTACAAGGATCACGTAGAACCGTTGAAGGTGCAGTTGGAGAGAGATCCTCTGCCCTTC 1711146 Query 34838 CCCCAGCTCAAAATTA 34853 ||| ||||||| |||| Sbjct 1711147 CCCAAGCTCAACATTA 1711162 Score = 134 bits (148), Expect = 1e-26 Identities = 364/556 (65%), Gaps = 36/556 (6%) Strand=Plus/Minus Query 6492 TAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGA 6551 |||| ||||||| |||||| || | || |||| | || ||| | | | | | || | Sbjct 1711162 TAATGTTGAGCTTGGGGAAGGGCAGAGGATCTCTCTCCAACTGCACCTTCAACGGTTCTA 1711103 Query 6552 TGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAAC-CAAC 6610 ||| | | ||||| |||||||| |||| | |||||| || ||| | ||| Sbjct 1711102 CGTGATCCTTGTAGACGTGCGCATCGCCCATGGCGAGCACCAATTCTTTAGGTTCGCAAT 1711043 Query 6611 CCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACC 6670 | | | || ||||||||||| || | ||||||||| ||||||||||||||||| || Sbjct 1711042 CGGTCACCTTG-GCGATCATGTAGGTCAACAGAGCGTAGCTAGCAATGTTGAACGGAACG 1710984 Query 6671 CCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAG------------CTCC 6718 || || || | || | || || || || | || || || || ||| Sbjct 1710983 CCCAAACCGAGATCGCATGAACGCTGGTACATTTGACACGAGAGGTGCTTTTTGCCCTCG 1710924 Query 6719 CCA------------------TTCGCGACGTAGAATTG-GCAGAGGGTGTGGCACGGGGG 6759 || |||| |||| |||| || ||| | |||||||||| || Sbjct 1710923 CCGCGGGCGTAGGCGTCGAGGTTCGAGACGAAGAACTGCGCAAACA-TGTGGCACGGCGG 1710865 Query 6760 GAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATC 6819 ||||||||||| ||| ||||| |||||||| |||| | || ||| | | ||| Sbjct 1710864 CAGCGCCATCAGTTCGAGGTCCTTGGGGTTCCAGGCGCTGAGCAGGATGCGACGGTCGGT 1710805 Query 6820 AGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATA 6879 |||||| ||| | |||||||||| | || || || | || || || | || Sbjct 1710804 AGGGTTGTTCTTGATCTTGTCGATCACTTGAGCGAGTTGATCGACGCCTTGACCGGTGTA 1710745 Query 6880 GTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGG 6939 || | |||| | ||||| || |||||||||| ||| ||||| |||||||| || Sbjct 1710744 GTTGGTATCGCAATCTGTGTACTCTGCGCCAAAGTGTCGCCATTGGAAACCGTAGACGGG 1710685 Query 6940 GCCCAAGTCGCCCTC-CTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACC 6998 |||||||||||| || || | | || | | ||| ||| ||| || || || || || | Sbjct 1710684 GCCCAAGTCGCCTTCTCTGCGGTGA-GACAGCCCGCGCGAGTCGAGGAATTCACGCGATC 1710626 Query 6999 CGTGAGCGTCCCAGAT 7014 ||| |||||||||| Sbjct 1710625 CGTTGCCGTCCCAGAT 1710610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262248711440