Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05-
20] 27 sequences; 20,067,589 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq11 93.3 4e-14
seq17 89.7 4e-13
>seq11
Length=790822
Score = 93.3 bits (102), Expect = 4e-14
Identities = 140/194 (72%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152
||| || || || || ||||||| ||| || || |||| |||||||| ||||| |||||
Sbjct 631701 CTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAA 631642
Query 39153 TATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG 39211
|| ||||||||||| || |||||| | | ||| ||||| || || |||| ||
Sbjct 631641 GATGAGACGCTGCTGATCAGGTGGG-ATACCCTCCTTGTCTTGAATCTTGGCCTTGA-CG 631584
Query 39212 TCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTA 39270
| | | | || ||| |||||||| || | ||||| | || || ||||| || ||
Sbjct 631583 TTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTACCGGTCAGAGTCTTG 631524
Query 39271 ACAAAGATTTGCAT 39284
|||||||| |||||
Sbjct 631523 ACAAAGATCTGCAT 631510
Score = 89.7 bits (98), Expect = 4e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 39088 GTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCC 39147
|||||||| || || || || || || | ||| || || | || || ||||| || ||
Sbjct 632162 GTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGACCATCCTCCAGCTGCTTACCA 632103
Query 39148 GCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTG 39207
||||| || | ||||||||||||| || | | ||| |||||| ||| || |||
Sbjct 632102 GCAAAGATCAAGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTG 632043
Query 39208 AGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGT 39266
| ||| | | | ||||| ||||| || || | ||| || | || ||||| |||||
Sbjct 632042 A-CGTTGTCAATAGTATCCGAGGACTCGACATCGAGCGTAATGGTCTTGCCCGTGAGCGT 631984
Query 39267 TTTAACAAAGATTTGCAT 39284
|| ||||||||||||||
Sbjct 631983 CTTGACAAAGATTTGCAT 631966
>seq17
Length=605135
Score = 89.7 bits (98), Expect = 4e-13
Identities = 152/218 (70%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
|| || ||||| || ||||| ||| || || || || || |||| ||| || || ||
Sbjct 221957 CGCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCG 222016
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189
|| || ||||| || || ||||| ||||| |||||||| |||| || | || || |||
Sbjct 222017 TCCTCGAGCTGCTTTCCTGCAAAGATAAGTCGCTGCTGATCGGGTGGGATGCCTTCCTTG 222076
Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248
|| ||| || |||| ||| | | | || || ||||| || || | |||||
Sbjct 222077 TCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGAT 222135
Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
| || || || || || ||||||||||| |||||||
Sbjct 222136 GGTCTTGCCGGTGAGAGTCTTAACAAAGATCTGCATCT 222173
Score = 89.7 bits (98), Expect = 4e-13
Identities = 151/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | |||||| || || || ||| || || || || || || | ||| || | |
Sbjct 300026 GCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGTGGCC 300085
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
||| |||||||| || || || || || || ||||||||||||| ||| | || ||| ||
Sbjct 300086 GTCCTCAAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTT 300145
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248
|||| ||| || |||| | | | || || ||||| || || | |||||
Sbjct 300146 GTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGAGTGAT 300205
Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
| || ||||| || || ||||| ||||| ||||||||
Sbjct 300206 GGTCTTACCCGTGAGGGTCTTAACGAAGATCTGCATCTT 300244
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429545458652651
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |