Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq11 93.3 4e-14 seq17 89.7 4e-13 >seq11 Length=790822 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || ||||||| ||| || || |||| |||||||| ||||| ||||| Sbjct 631701 CTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAA 631642 Query 39153 TATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG 39211 || ||||||||||| || |||||| | | ||| ||||| || || |||| || Sbjct 631641 GATGAGACGCTGCTGATCAGGTGGG-ATACCCTCCTTGTCTTGAATCTTGGCCTTGA-CG 631584 Query 39212 TCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTA 39270 | | | | || ||| |||||||| || | ||||| | || || ||||| || || Sbjct 631583 TTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTACCGGTCAGAGTCTTG 631524 Query 39271 ACAAAGATTTGCAT 39284 |||||||| ||||| Sbjct 631523 ACAAAGATCTGCAT 631510 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 39088 GTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCC 39147 |||||||| || || || || || || | ||| || || | || || ||||| || || Sbjct 632162 GTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGACCATCCTCCAGCTGCTTACCA 632103 Query 39148 GCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTG 39207 ||||| || | ||||||||||||| || | | ||| |||||| ||| || ||| Sbjct 632102 GCAAAGATCAAGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTG 632043 Query 39208 AGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGT 39266 | ||| | | | ||||| ||||| || || | ||| || | || ||||| ||||| Sbjct 632042 A-CGTTGTCAATAGTATCCGAGGACTCGACATCGAGCGTAATGGTCTTGCCCGTGAGCGT 631984 Query 39267 TTTAACAAAGATTTGCAT 39284 || |||||||||||||| Sbjct 631983 CTTGACAAAGATTTGCAT 631966 >seq17 Length=605135 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || ||||| ||| || || || || || |||| ||| || || || Sbjct 221957 CGCAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCG 222016 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| || || ||||| ||||| |||||||| |||| || | || || ||| Sbjct 222017 TCCTCGAGCTGCTTTCCTGCAAAGATAAGTCGCTGCTGATCGGGTGGGATGCCTTCCTTG 222076 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 || ||| || |||| ||| | | | || || ||||| || || | ||||| Sbjct 222077 TCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGAT 222135 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || || || || || ||||||||||| ||||||| Sbjct 222136 GGTCTTGCCGGTGAGAGTCTTAACAAAGATCTGCATCT 222173 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | |||||| || || || ||| || || || || || || | ||| || | | Sbjct 300026 GCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGTGGCC 300085 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| |||||||| || || || || || || ||||||||||||| ||| | || ||| || Sbjct 300086 GTCCTCAAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTT 300145 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| || |||| | | | || || ||||| || || | ||||| Sbjct 300146 GTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGAGTGAT 300205 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | || ||||| || || ||||| ||||| |||||||| Sbjct 300206 GGTCTTACCCGTGAGGGTCTTAACGAAGATCTGCATCTT 300244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545458652651