Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq11 104 2e-17 seq17 87.8 1e-12 >seq11 Length=790822 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || || |||||||| ||||| || || || | Sbjct 631510 ATGCAGATCTTTGTCAAGACTCTGACCGGTAAGACGATCACCCTCGAGGTGGAGTCTTCC 631569 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | || || ||| ||||| || ||| | || || ||||| Sbjct 631570 GACACTATCGACAACGTCAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCTGATCAG 631629 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || || || |||| ||||| | |||||||||| Sbjct 631630 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTTTCCGATTACAAC 631689 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 631690 ATCCAGAAGGAGTCGAC 631706 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || ||||| ||||| |||||||| || || || || || || Sbjct 631738 ATGCAGATTTTCGTCAAGACGCTCACAGGAAAGACGATCACACTGGAGGTCGAGTCTTCG 631797 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | || || ||||| || ||| | ||||| || || Sbjct 631798 GACACGATCGACAATGTGAAAGC-CAAGATCCAGGACAAGGAGGGTATCCCGCCTGACCA 631856 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || || || || || || || |||| || ||| | ||| ||||| Sbjct 631857 GCAGCGACTCATTTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACTCTCTCCGACTACAA 631916 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || ||| ||| || || | || | | ||||| ||||| Sbjct 631917 CATTCAGAAGGAGAGCACGTTGCACCTTGTCCTTCGATTGCGCGGAGG 631964 >seq17 Length=605135 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| |||||||| ||||||||||| || || ||||||||||| || || || Sbjct 300244 AAGATGCAGATCTTCGTTAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTCGAGTCT 300185 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 ||||||| | || ||| | || | || || ||||| || || | || || || Sbjct 300184 TCGGACACCATCGACAATGTCAAGGC-CAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 300126 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG--AACGCACTTTAGGCGAT 23784 || ||||| | || || || || || || || || |||| || | |||| | || Sbjct 300125 CCAGCAGCGCCTGATCTTCGCTGGTAAGCAGCTTGAGGACGGCCACACCCTTTCG--GAC 300068 Query 23785 TACAACATACAAAAAGAGTCCAC 23807 |||||||| || || ||||| || Sbjct 300067 TACAACATCCAGAAGGAGTCGAC 300045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009488773716