Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05-
20] 27 sequences; 20,067,589 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq11 104 2e-17
seq17 87.8 1e-12
>seq11
Length=790822
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || || || || || || |||||||| ||||| || || || |
Sbjct 631510 ATGCAGATCTTTGTCAAGACTCTGACCGGTAAGACGATCACCCTCGAGGTGGAGTCTTCC 631569
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|||||| | || | | || || ||| ||||| || ||| | || || |||||
Sbjct 631570 GACACTATCGACAACGTCAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCTGATCAG 631629
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| | || ||||||||||| || || || |||| ||||| | ||||||||||
Sbjct 631630 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTTTCCGATTACAAC 631689
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || || ||||| ||
Sbjct 631690 ATCCAGAAGGAGTCGAC 631706
Score = 98.7 bits (108), Expect = 7e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || || ||||| ||||| |||||||| || || || || || ||
Sbjct 631738 ATGCAGATTTTCGTCAAGACGCTCACAGGAAAGACGATCACACTGGAGGTCGAGTCTTCG 631797
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | ||| | || || ||||| || ||| | ||||| || ||
Sbjct 631798 GACACGATCGACAATGTGAAAGC-CAAGATCCAGGACAAGGAGGGTATCCCGCCTGACCA 631856
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| | || || || || || || || || |||| || ||| | ||| |||||
Sbjct 631857 GCAGCGACTCATTTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACTCTCTCCGACTACAA 631916
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
||| || || ||| ||| || || | || | | ||||| |||||
Sbjct 631917 CATTCAGAAGGAGAGCACGTTGCACCTTGTCCTTCGATTGCGCGGAGG 631964
>seq17
Length=605135
Score = 87.8 bits (96), Expect = 1e-12
Identities = 144/203 (71%), Gaps = 6/203 (3%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| |||||||| ||||||||||| || || ||||||||||| || || ||
Sbjct 300244 AAGATGCAGATCTTCGTTAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTCGAGTCT 300185
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
||||||| | || ||| | || | || || ||||| || || | || || ||
Sbjct 300184 TCGGACACCATCGACAATGTCAAGGC-CAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 300126
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG--AACGCACTTTAGGCGAT 23784
|| ||||| | || || || || || || || || |||| || | |||| | ||
Sbjct 300125 CCAGCAGCGCCTGATCTTCGCTGGTAAGCAGCTTGAGGACGGCCACACCCTTTCG--GAC 300068
Query 23785 TACAACATACAAAAAGAGTCCAC 23807
|||||||| || || ||||| ||
Sbjct 300067 TACAACATCCAGAAGGAGTCGAC 300045
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338009488773716
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |