Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq8 109 5e-19 >seq8 Length=837966 Score = 109 bits (120), Expect = 5e-19 Identities = 349/537 (65%), Gaps = 11/537 (2%) Strand=Plus/Minus Query 4563 TGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACC 4621 |||| ||||||||| | || | || || ||||| || || || | |||||||| | ||| Sbjct 244915 TGCAGACCTTCGTCGC-GCGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACC 244857 Query 4622 TCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGC 4681 | ||| || ||||| || || | ||| || || || || ||||| |||||||| ||||| Sbjct 244856 GCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATGCCTTCAACGGC 244797 Query 4682 GGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGC 4741 |||||| || || | || |||| | | | ||||| | |||||| | || Sbjct 244796 GGCAAAGGCGACGAGACGCTCGGCGAAAGTGGCGCGCTTGTCGCTGATCCATCGCAGCGC 244737 Query 4742 CCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA---TAATTTACT 4798 ||||| ||||| | ||| ||| || || || | | |||| ||| | | | Sbjct 244736 CCAGTCGGCTTTCTGCTTGACGACGGGGATGGTCTCGACGGCGTCAAAGAGGAGCTCGCG 244677 Query 4799 TTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTAT 4858 | || || || |||| || ||||| || || || || | || || || || Sbjct 244676 CTGCTC---GGGCTCGCGAATGTAGGTGTCGATGAGGAGCGAGTAGGTCTCCGAGTGGAT 244620 Query 4859 ATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTT 4918 || || || ||||| || ||||| ||||| | ||| || | |||| || ||| Sbjct 244619 GTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCGGCGGCTTGCACCTCGGA 244560 Query 4919 ACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAA 4978 | || | || || | ||| ||||| || |||||||| || || || || || | Sbjct 244559 GCTGAAACGCTCGACGAGGTTCTCGTTGACGATACCGTCGGAAGCGGCGAAGAAGGCGAG 244500 Query 4979 AACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTT---CCAGTGGGGCAAATC 5035 || || || ||||||| |||||| || || || || ||||| | | | ||| Sbjct 244499 GACGTGCGAGATAAAGTGGCGTTCGTTGTCGTTGAGCTTGTTGTCCCAGTCGTGGAGATC 244440 Query 5036 TTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092 || | | || | ||||| | ||||| || || || || || ||||||||||| Sbjct 244439 CTTGGAAAGGTCGATCTCTTCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTTGTACAT 244383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049459473991