Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1 150 1e-31 >seq1 Length=2009762 Score = 150 bits (166), Expect = 1e-31 Identities = 434/660 (66%), Gaps = 46/660 (7%) Strand=Plus/Minus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 |||| ||||| || || ||||| | ||| ||||| |||||| ||||||||| || Sbjct 1711150 TGGGGAAGGGCAGAGGATCTCTCTCCAACTGCACCTTCAACGGTTCTACGTGATCCTTGT 1711091 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 ||||||| || || |||| || | | || || ||| ||||| |||| || | | Sbjct 1711090 AGACGTGCGCATCGCCCATGGCGAGCACCAATTCTTTAGGTTCGCAATCGGTCACCTTGG 1711031 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 | |||||||| || | |||| |||||| || ||||| || || || || | || | | Sbjct 1711030 CGATCATGTAGGTCAACAGAGCGTAGCTAGCAATGTTGAACGGAACGCCCAAACCGAGAT 1710971 Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCT-CT-----CCATCGC------------ 27325 | | || | |||||| | ||||||||||| | || || |||| Sbjct 1710970 CGCATGAACGCTGGTACATTTGACACGAGAGGTGCTTTTTGCCCTCGCCGCGGGCGTAGG 1710911 Query 27326 --------TT----ACGTAAAACTG---ACATATGGCGTGGCACGGAGGAAGAGCCATGA 27370 || ||| | ||||| | | || ||||||||| || || ||||| | Sbjct 1710910 CGTCGAGGTTCGAGACGAAGAACTGCGCAAACAT---GTGGCACGGCGGCAGCGCCATCA 1710854 Query 27371 GGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCC 27430 | | | ||| |||||||||||||||| | | |||||| | ||| ||||||||| Sbjct 1710853 GTTCGAGGTCCTTGGGGTTCCAGGCGCTGAGCAGGATGCGACGGTCGGTAGGGTTGTTCT 1710794 Query 27431 TGATGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGT--CTACCC 27487 |||| ||| | | || || || ||||| || || || | ||||| || | Sbjct 1710793 TGATCTTGTCGATCAC-TTGAGCGAGTTGATCGACGCCTTGACCGGTGTAGTTGGTA-TC 1710736 Query 27488 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGT 27547 || || ||||||||||| || || || | ||||||||| ||||| || || |||| || Sbjct 1710735 GCA-ATCTGTGTACTCTGCGCCAAAGTGTCGCCATTGGAAACCGTAGACGGGGCCCAAGT 1710677 Query 27548 CTCCCTCTTCCCTGTGCTCGA-AGCCC-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGC 27605 | || ||| | ||| || ||||| | | ||| | || || | || |||||| | Sbjct 1710676 CGCCTTCTCTGCGGTG--AGACAGCCCGCGCGAGTCGAGGAATTCACGCGATCCGTTGCC 1710619 Query 27606 GTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAA 27665 ||||||||| | ||| ||||| || | |||| ||| || | || || || || Sbjct 1710618 GTCCCAGATGTGTACGCCCTTATCTGTGAGCAGTTTCGAATCGGTCTTGCCAGCAACAAA 1710559 Query 27666 CCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 27725 ||| || |||||||| | ||| | ||||||| | |||||| ||||| || || || Sbjct 1710558 CCAGAGGAGCTCCTCGAGCACGCCACGGAAAAAGACACGCTTGGTGGTGAGCAGAGGCAA 1710499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369507078409037