Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05-
20] 27 sequences; 20,067,589 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq1 150 1e-31
>seq1
Length=2009762
Score = 150 bits (166), Expect = 1e-31
Identities = 434/660 (66%), Gaps = 46/660 (7%)
Strand=Plus/Minus
Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163
|||| ||||| || || ||||| | ||| ||||| |||||| ||||||||| ||
Sbjct 1711150 TGGGGAAGGGCAGAGGATCTCTCTCCAACTGCACCTTCAACGGTTCTACGTGATCCTTGT 1711091
Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223
||||||| || || |||| || | | || || ||| ||||| |||| || | |
Sbjct 1711090 AGACGTGCGCATCGCCCATGGCGAGCACCAATTCTTTAGGTTCGCAATCGGTCACCTTGG 1711031
Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283
| |||||||| || | |||| |||||| || ||||| || || || || | || | |
Sbjct 1711030 CGATCATGTAGGTCAACAGAGCGTAGCTAGCAATGTTGAACGGAACGCCCAAACCGAGAT 1710971
Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCT-CT-----CCATCGC------------ 27325
| | || | |||||| | ||||||||||| | || || ||||
Sbjct 1710970 CGCATGAACGCTGGTACATTTGACACGAGAGGTGCTTTTTGCCCTCGCCGCGGGCGTAGG 1710911
Query 27326 --------TT----ACGTAAAACTG---ACATATGGCGTGGCACGGAGGAAGAGCCATGA 27370
|| ||| | ||||| | | || ||||||||| || || ||||| |
Sbjct 1710910 CGTCGAGGTTCGAGACGAAGAACTGCGCAAACAT---GTGGCACGGCGGCAGCGCCATCA 1710854
Query 27371 GGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCC 27430
| | | ||| |||||||||||||||| | | |||||| | ||| |||||||||
Sbjct 1710853 GTTCGAGGTCCTTGGGGTTCCAGGCGCTGAGCAGGATGCGACGGTCGGTAGGGTTGTTCT 1710794
Query 27431 TGATGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGT--CTACCC 27487
|||| ||| | | || || || ||||| || || || | ||||| || |
Sbjct 1710793 TGATCTTGTCGATCAC-TTGAGCGAGTTGATCGACGCCTTGACCGGTGTAGTTGGTA-TC 1710736
Query 27488 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGT 27547
|| || ||||||||||| || || || | ||||||||| ||||| || || |||| ||
Sbjct 1710735 GCA-ATCTGTGTACTCTGCGCCAAAGTGTCGCCATTGGAAACCGTAGACGGGGCCCAAGT 1710677
Query 27548 CTCCCTCTTCCCTGTGCTCGA-AGCCC-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGC 27605
| || ||| | ||| || ||||| | | ||| | || || | || |||||| |
Sbjct 1710676 CGCCTTCTCTGCGGTG--AGACAGCCCGCGCGAGTCGAGGAATTCACGCGATCCGTTGCC 1710619
Query 27606 GTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAA 27665
||||||||| | ||| ||||| || | |||| ||| || | || || || ||
Sbjct 1710618 GTCCCAGATGTGTACGCCCTTATCTGTGAGCAGTTTCGAATCGGTCTTGCCAGCAACAAA 1710559
Query 27666 CCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 27725
||| || |||||||| | ||| | ||||||| | |||||| ||||| || || ||
Sbjct 1710558 CCAGAGGAGCTCCTCGAGCACGCCACGGAAAAAGACACGCTTGGTGGTGAGCAGAGGCAA 1710499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369507078409037
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |