Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq8 100 4e-16 >seq8 Length=837966 Score = 100 bits (110), Expect = 4e-16 Identities = 332/515 (64%), Gaps = 6/515 (1%) Strand=Plus/Minus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || |||||||||||||| || || || || |||||||| || || | ||| Sbjct 244888 TCGTTGGAGAAGGTGAGACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCG 244829 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 || || || || ||||| |||||||| ||||| ||||| ||| || | ||| || || Sbjct 244828 AAGGAGCCGGAGAAGAAGATGCCTTCAACGGCGGCAAAGGCGACGAGACGCTCGGCGAAA 244769 Query 48303 CTGGC---TTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 |||| | || | ||||| || | ||||| || || |||| ||| || || Sbjct 244768 GTGGCGCGCTTGTCGCTGATCCATCGCAGCGCCCAGTCGGCTTTCTGCTTGACGACGGGG 244709 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCT 48419 || || || | || | |||||| | | | | | || || ||| || || Sbjct 244708 ATGGTCTCGACGGCGTCAAAGAGGAGCTCGCGCTGCTCGGGCTCGCGAATGTAGGTGTCG 244649 Query 48420 ATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 || | || || | || ||||| || || || || ||||| || ||||| || Sbjct 244648 ATGAGGAGCGAGTAGGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAG 244589 Query 48480 CATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACT 48539 || | || || | | || ||||| | | || || || | | ||||| || || Sbjct 244588 CAACGAGCCTCGGCGGCTTGCACCTCGGAGCTGAAACGCTCGACGAGGTTCTCGTTGACG 244529 Query 48540 ATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAA 48599 || || || ||| || || || || | || || ||||| | ||||||| Sbjct 244528 ATACCGTCGGAAGCGGCGAAGAAGGCGAGGACGTGCGAGATAAAGTGGCGTTCGTTGTCG 244469 Query 48600 GTCAGTTTATT---CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAA 48656 | || || || |||||| | || ||| || || | || | ||||| || ||||| Sbjct 244468 TTGAGCTTGTTGTCCCAGTCGTGGAGATCCTTGGAAAGGTCGATCTCTTCGGCGGTCCAG 244409 Query 48657 AATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 || || ||||| || ||||| ||||| | ||| || Sbjct 244408 AAGGAAGCCTCGGCCTTTTTGTACATTTGCCAGAT 244374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668565549280