Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05-
20] 27 sequences; 20,067,589 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq11 138 8e-28
seq17 123 2e-23
seq1 98.7 7e-16
>seq11
Length=790822
Score = 138 bits (152), Expect = 8e-28
Identities = 162/218 (74%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||||||| || || |||||| |||||||||||||||| || ||| |||| ||
Sbjct 631718 ACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCA 631659
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||||||||| | |||||||||||| | || | ||| ||||| ||
Sbjct 631658 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCTTGA 631599
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | || ||||||| || |||||||| | || ||||||||
Sbjct 631598 ATCTTGGCCTTGACGTTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTA 631539
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGA--TGTGA 44344
|| || || ||||| || ||||| ||||||| |||||
Sbjct 631538 CCGGTCAGAGTCTTGACAAAGATCTGCATGACCTGTGA 631501
Score = 134 bits (148), Expect = 1e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||| | ||||||||||| || |||||||| || | || ||| | || |||
Sbjct 632174 ACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGACCATCCTCC 632115
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || ||||||||||| |||||||| || | ||| | ||| ||||| |||
Sbjct 632114 AGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGG 632055
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | || || || | ||| || || || | |||||| |||||
Sbjct 632054 ATCTTGGCCTTGACGTTGTCAATAGTATCCGAGGACTCGACATCGAGCGTAATGGTCTTG 631995
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||||| ||||| || |||||||||||
Sbjct 631994 CCCGTGAGCGTCTTGACAAAGATTTGCAT 631966
Score = 122 bits (134), Expect = 6e-23
Identities = 156/212 (74%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||| | |||||||||||| || |||||||| |||| ||| || |||| ||
Sbjct 631946 ACAAGGTGCAACGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGGCCGTCCTCG 631887
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || || || || | |||||||| || | || | ||| ||||| |||
Sbjct 631886 AGCTGCTTACCAGCGAAAATGAGTCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGG 631827
Query 44249 ATCTTCTGCTT---CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
||||| |||| || ||| | || ||||| | || || ||||||| || ||||||
Sbjct 631826 ATCTTG-GCTTTCACATTGT--CGATCGTGTCCGAAGACTCGACCTCCAGTGTGATCGTC 631770
Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| ||||| ||||| ||||| || |||||
Sbjct 631769 TTTCCTGTGAGCGTCTTGACGAAAATCTGCAT 631738
>seq17
Length=605135
Score = 123 bits (136), Expect = 2e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184
||| |||| ||| ||||| |||||| ||||||||||| |||| || ||| ||||
Sbjct 221959 CAAAACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTC 222018
Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244
|| |||||||| || |||||||| | ||||||||||| | || | |||||||| ||
Sbjct 222019 CTCGAGCTGCTTTCCTGCAAAGATAAGTCGCTGCTGATCGGGTGGGATGCCTTCCTTGTC 222078
Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304
||||| ||| | | | |||||||| | ||| || ||||| | || || ||
Sbjct 222079 TTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGT 222138
Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || ||||| ||||| || ||||| |||||
Sbjct 222139 CTTGCCGGTGAGAGTCTTAACAAAGATCTGCAT 222171
Score = 116 bits (128), Expect = 3e-21
Identities = 154/212 (73%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| ||| || || |||||| ||||||||||| || | || | | |||| ||
Sbjct 300032 CACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGTGGCCGTCCTC 300091
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| || || ||||||| |||||||| || | || | || ||||| |||
Sbjct 300092 AAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTG 300151
Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
||||| ||| || ||| | |||||||| | || || ||||| | || || |||
Sbjct 300152 GATCTTGGCCTTGACATTGT--CGATGGTGTCCGAAGACTCGACCTCGAGAGTGATGGTC 300209
Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| |||||||||||||| |||||||| |||||
Sbjct 300210 TTACCCGTGAGGGTCTTAACGAAGATCTGCAT 300241
>seq1
Length=2009762
Score = 98.7 bits (108), Expect = 7e-16
Identities = 135/187 (72%), Gaps = 4/187 (2%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||| || || |||||| ||||||||||| || | || ||| |||| ||
Sbjct 1808589 ACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGGCCGTCCTCG 1808530
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||| ||||||| |||||||| || | || | || ||||| |||
Sbjct 1808529 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGA 1808470
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || |||| |||||||| | ||| |||||||| | ||||| ||||
Sbjct 1808469 ATCTTGGCCTTGACATTGTT--GATGGTGTCCGAGGACTCCACCTCGAGGGTAATGGTCT 1808412
Query 44307 TTCCCGT 44313
| || ||
Sbjct 1808411 TACCTGT 1808405
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359990281540659
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |