Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20scitamineum_20[genbank_20GCA_5F001010845.1_202015-05- 20] 27 sequences; 20,067,589 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq17 165 2e-35 seq11 141 2e-28 seq1 140 8e-28 >seq17 Length=605135 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || |||||||| || || || |||||||||||||| || ||| ||| Sbjct 222168 CAGATCTTTGTTAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCTGAC 222109 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| || ||||| ||||| ||||| || || ||||| Sbjct 222108 ACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCCGATCAGCAG 222049 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||| || ||||| |||||||| || || | |||||| |||| || ||| || Sbjct 222048 CGACTTATCTTTGCAGGAAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAACATC 221989 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || || || || | |||||| | ||| Sbjct 221988 CAGAAGGAGTCGACGCTCCACTTGGTTTTGCGTCTC 221953 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || ||||| |||||||| || || ||| Sbjct 300238 CAGATCTTCGTTAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTCGAGTCTTCGGAC 300179 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 300178 ACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 300119 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || || || || ||| | || || ||| || Sbjct 300118 CGCCTGATCTTCGCTGGTAAGCAGCTTGAGGACGGCCACACCCTTTCGGACTACAACATC 300059 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 300058 CAGAAGGAGTCGACCCTCCA-CTTG 300035 >seq11 Length=790822 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || || || |||||||||||||||||||| || ||| Sbjct 631513 CAGATCTTTGTCAAGACTCTGACCGGTAAGACGATCACCCTCGAGGTGGAGTCTTCCGAC 631572 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||||| ||||| || || ||||| || || ||||| Sbjct 631573 ACTATCGACAACGTCAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCTGATCAGCAG 631632 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| || || || | || ||| ||||||| ||| || Sbjct 631633 CGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTTTCCGATTACAACATC 631692 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 631693 CAGAAGGAGTCGACCCTCCACCTGGT 631718 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||||||||| |||||||| || ||||| || || ||| Sbjct 631741 CAGATTTTCGTCAAGACGCTCACAGGAAAGACGATCACACTGGAGGTCGAGTCTTCGGAC 631800 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| ||||| |||||||| || || ||||| || |||||||| Sbjct 631801 ACGATCGACAATGTGAAAGCCAAGATCCAGGACAAGGAGGGTATCCCGCCTGACCAGCAG 631860 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| || ||||| || || |||||||| || || | ||||| |||| || ||| | Sbjct 631861 CGACTCATTTTCGCTGGTAAGCAGCTCGAGGACGGCCGTACTCTCTCCGACTACAACATT 631920 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || |||| ||||| Sbjct 631921 CAGAAGGAGAGCACGTTGCACCTTGT 631946 >seq1 Length=2009762 Score = 140 bits (154), Expect = 8e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 ||||| || || || |||||||||||||| ||| ||||||||| | || ||||| Sbjct 1808405 ACAGGTAAGACCATTACCCTCGAGGTGGAGTCCTCGGACACCATCAACAATGTCAAGGCC 1808464 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||||||||| || || ||||| || |||||||| || || ||||||||||| || Sbjct 1808465 AAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAG 1808524 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| || || | || ||| | || || ||| |||| || || || || || || Sbjct 1808525 CAGCTCGAGGACGGCCGCACGCTTTCGGACTACAACATCCAGAAGGAGTCGACTCTCCAC 1808584 Query 178125 CTTGT 178129 ||||| Sbjct 1808585 CTTGT 1808589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730783584238