Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Suillus_20brevipes_20[JGI_20Suibr1_202013-02-15] 1,550 sequences; 51,712,595 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq47 114 1e-20 seq16 98.7 1e-15 >seq47 Length=240645 Score = 114 bits (126), Expect = 1e-20 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || ||||||||||| | ||| || ||| |||| || | |||||| || Sbjct 28409 GTGCTCTCCTTCTGGATATTGTAATCCGACAGCGTGCGCCCGTCCTCCAACTGCTTTCCG 28350 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTT 43105 || || || || ||||||||||| | || | || ||| |||||| ||| | || | || Sbjct 28349 GCAAAGATCAGACGCTGCTGGTCTGGTGGAATGCCCTCTTTGTCC-TGAATCTTCGCCTT 28291 Query 43106 GAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCG 43164 || ||| | | | ||||| ||| ||||| || | ||||| || || ||||| || | Sbjct 28290 GA-CGTTGTCGATGGTGTCTGACGACTCCACCTCCAATGTGATTGTCTTACCCGTGAGGG 28232 Query 43165 TCTTTACAAAGATTTGCAT 43183 |||| || ||||| ||||| Sbjct 28231 TCTTGACGAAGATCTGCAT 28213 >seq16 Length=421267 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 |||||||||||||| || || ||||||| || || || | || || | |||||| || Sbjct 331797 GTGCTCTCCTTTTGGATGTTATAATCAGAGAGCGTACGACCATCTTCCAACTGCTTTCCT 331856 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTT 43105 ||||| || || || || ||||| | || | || ||||||||| ||| | |||| || Sbjct 331857 GCGAAGATCAGGCGTTGTTGGTCAGGAGGAATGCCTTCCTTGTCC-TGAATCTTTGCCTT 331915 Query 43106 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 | | | | |||||| || ||||| || | |||||||| || ||||| || || Sbjct 331916 CACATTGTCGATAGTGTCGGATGACTCCACCTCCAAAGTGATGGTCTTCCCCGTGAGGGT 331975 Query 43166 CTTTACAAAGATTTGCAT 43183 ||| ||||| || ||||| Sbjct 331976 CTTAACAAAAATCTGCAT 331993 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| |||||||||||||| | || || || |||| || | |||||| || || || Sbjct 332259 TCCTTCTGAATATTGTAATCTGAGAGTGTGCGGCCGTCTTCCAACTGCTTTCCGGCAAAG 332318 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| || || ||||| | || | || ||||||||| ||| | |||| || ||| Sbjct 332319 ATGAGGCGTTGTTGGTCAGGAGGAATGCCTTCCTTGTCC-TGAATCTTTGCTTTCACGTT 332377 Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | || ||| || || || || | ||||||||| || ||||| || ||||| || Sbjct 332378 GTCGATGGTATCGGAGGACTCTACTTCCAACGTGATGGTCTTCCCCGTGAGGGTCTTAAC 332437 Query 43172 AAAGATTTGCAT 43183 || || ||||| Sbjct 332438 GAAAATCTGCAT 332449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571806521034000