Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Suillus_20brevipes_20[JGI_20Suibr1_202013-02-15] 1,550 sequences; 51,712,595 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq16 95.1 1e-14 seq47 91.5 1e-13 >seq16 Length=421267 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || ||||| |||||||| || |||||||| || | Sbjct 331995 CCTCCGCGAAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAATCCGAA 332054 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || |||| ||||| || || || ||| | ||||| || || || || || Sbjct 332055 AGCGTGCGACCGTCTTCCAACTGCTTTCCAGCAAAGATAAGGCGTTGCTGATCAGGGGGA 332114 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| |||| | |||||| | | | | |||||| | ||| | Sbjct 332115 ATGCCTTCCTTGTCTTGGATTTTCGCCTTCACGTTGTCGATGGTGTCGGATGATTCCACT 332174 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || || || || ||||||||||||||||| Sbjct 332175 TCCAACGTGATGGTCTTACCCGTGAGGGTCTTGACAAAAATCTGCAT 332221 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | || || ||||| ||||| || || ||||| || | Sbjct 332223 CCTCCACGGAGACGTAGAACGAGGTGAAGGGTGGATTCCTTCTGAATATTGTAATCTGAG 332282 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | |||| ||||| || || || ||| | || || || |||||||| ||| Sbjct 332283 AGTGTGCGGCCGTCTTCCAACTGCTTTCCGGCAAAGATGAGGCGTTGTTGGTCAGGAGGA 332342 Query 16829 ACGCCCTCTTTGTCGGCAAT--TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| ||| ||||| ||||| | | | | || ||| || ||| Sbjct 332343 ATGCCTTCCTTGTCCTGAATCTTTGCT--TTCACGTTGTCGATGGTATCGGAGGACTCTA 332400 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||||||| || || || || || || || ||||||||||| Sbjct 332401 CTTCCAACGTGATGGTCTTCCCCGTGAGGGTCTTAACGAAAATCTGCAT 332449 >seq47 Length=240645 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || ||||||||||||| | ||| | |||| |||| || Sbjct 28187 TGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAGCTGC 28128 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || |||| || ||||| || || ||| | ||||| ||||| ||| | | Sbjct 28127 TTGCCTGCGAAAATGAGGCGCTGCTGATCGGGAGGGATACCCTCCTTGTCTTGAATCTTC 28068 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | |||||| | |||| |||| ||||| || || || || Sbjct 28067 GCCTTCACATTGTCGATAGTGTCAGAAGACTCCACCTCCAACGTGATCGTCTTGCCCGTG 28008 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || |||||||| Sbjct 28007 AGGGTCTTGACGAAGATCTGCAT 27985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405080347634500