Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Suillus_20brevipes_20[JGI_20Suibr1_202013-02-15] 1,550 sequences; 51,712,595 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq47 129 7e-25 seq16 104 3e-17 seq101 86.0 7e-12 >seq47 Length=240645 Score = 129 bits (142), Expect = 7e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| ||||||||||| || || || |||||| |||| || | |||||| ||| Sbjct 28409 GTGCTCTCCTTCTGGATATTGTAATCCGACAGCGTGCGCCCGTCCTCCAACTGCTTTCCG 28350 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 || || |||| ||||||||||| | || | || ||| |||||| |||||| |||| Sbjct 28349 GCAAAGATCAGACGCTGCTGGTCTGGTGGAATGCCCTCTTTGTCCTGAATCTTCGCCTTG 28290 Query 46517 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575 | ||| | | | ||||| ||| ||||| |||| ||||| || || ||||| || || Sbjct 28289 A-CGTTGTCGATGGTGTCTGACGACTCCACCTCCAATGTGATTGTCTTACCCGTGAGGGT 28231 Query 46576 TTTAACAAAGATTTGCAT 46593 || || ||||| ||||| Sbjct 28230 CTTGACGAAGATCTGCAT 28213 Score = 125 bits (138), Expect = 8e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| ||||| || |||| |||||||||||||| ||||| Sbjct 27948 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGTCCGTCTTCGAGCTGCTTGCCAGCGAA 27889 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || || || || | || | || |||||||||| |||||| ||| | ||| Sbjct 27888 GATGAGTCGTTGTTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTCA-CGT 27830 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || ||||| |||| |||||| || |||||||| || || || | Sbjct 27829 TGTCGATGGTGTCAGATGACTCCACTTCCAACGTGATCGTCTTGCCCGTGAGGGTCTTGA 27770 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 27769 CGAAGATCTGCAT 27757 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||||||||| || ||||| |||| || ||||||||||| ||||| Sbjct 28176 CTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAGCTGCTTGCCTGCGAA 28117 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||| |||| || | | ||||||||| |||||| ||| | | Sbjct 28116 AATGAGGCGCTGCTGATCGGGAGGGATACCCTCCTTGTCTTGAATCTTCGCCTTCACATT 28057 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || ||||| |||| |||||| || |||||||| || || || || Sbjct 28056 GTCGATAGTGTCAGAAGACTCCACCTCCAACGTGATCGTCTTGCCCGTGAGGGTCTTGAC 27997 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 27996 GAAGATCTGCAT 27985 Score = 82.4 bits (90), Expect = 9e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| |||| || | ||| |||||| ||||| |||||||||| Sbjct 27757 TGCCTCCACGGAGACGCAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGG 27698 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 | || || || | || |||||||||||||| || || || | ||||||||||| Sbjct 27697 AGAGTGTACGACCATCCTCGAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTC 27643 >seq16 Length=421267 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||||||||| || || || || || || || | || || | |||||| || Sbjct 331797 GTGCTCTCCTTTTGGATGTTATAATCAGAGAGCGTACGACCATCTTCCAACTGCTTTCCT 331856 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| |||| ||| || ||||| | || | || ||||||||| ||||| ||| Sbjct 331857 GCGAAGATCAGGCGTTGTTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTTGCCTTC 331916 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | |||||| || ||||| |||| |||||||| || ||||| || || Sbjct 331917 ACATTGTCGATAGTGTCGGATGACTCCACCTCCAAAGTGATGGTCTTCCCCGTGAGGGTC 331976 Query 46577 TTAACAAAGATTTGCAT 46593 |||||||| || ||||| Sbjct 331977 TTAACAAAAATCTGCAT 331993 >seq101 Length=139910 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 46388 AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGC 46447 ||||| | ||| |||||| ||||| ||||||||||| ||||| || |||| |||| | Sbjct 112904 AGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGACCGTCTTCGAAC 112845 Query 46448 TGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||||||| || || ||||| ||||| ||||| Sbjct 112844 TGCTTGCCAGCAAAGATCAAACGCTGTTGGTC 112813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565227448506000