Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Suillus_20brevipes_20[JGI_20Suibr1_202013-02-15] 1,550 sequences; 51,712,595 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq47 107 1e-18 seq16 107 1e-18 >seq47 Length=240645 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||| | || || || || | Sbjct 27985 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGTTGGAGGTGGAGTCTTCT 28044 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| | || | || ||| ||||| || ||| | || || ||||| Sbjct 28045 GACACTATCGACAATGTGAAGGC-GAAGATTCAAGACAAGGAGGGTATCCCTCCCGATCA 28103 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || || ||||| || |||||||||| ||||| | ||| ||||| Sbjct 28104 GCAGCGCCTCATTTTCGCAGGCAAGCAGCTGGAAGACGGCCGCACCCTTTCCGACTACAA 28163 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 28164 CATTCAGAAGGAGTCTAC 28181 Score = 105 bits (116), Expect = 5e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||| | ||||| || || | Sbjct 27757 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGTTGGAAGTGGAGTCATCT 27816 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||| || ||||| || || | || || |||||| Sbjct 27817 GACACCATCGACAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAA 27876 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || | || || || ||||| || || ||||||| ||| ||| | ||| |||||| Sbjct 27877 CAACGACTCATCTTCGCTGGCAAGCAGCTCGAAGACGGACGTACTCTTTCCGACTACAAC 27936 Query 23791 ATACAAAAAGAGTCCACA 23808 || || || ||||||||| Sbjct 27937 ATCCAGAAGGAGTCCACA 27954 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| | || || || || | Sbjct 28213 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACAATCACATTGGAGGTGGAGTCGTCA 28272 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| |||||||| || | || ||||| || Sbjct 28273 GACACCATCGACAACGTCAAGGCGAAGATTCAGGACAAAGAGGGCATTCCACCAGACCAG 28332 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || |||||||| || || |||| |||| ||||| | |||||||| Sbjct 28333 CAGCGTCTGATCTTTGCCGGAAAGCAGTTGGAGGACGGGCGCACGCTGTCGGATTACAAT 28392 Query 23791 ATACAAAAAGAG 23802 || || || ||| Sbjct 28393 ATCCAGAAGGAG 28404 >seq16 Length=421267 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| ||||||||||| || || ||||| | ||||| || ||| | Sbjct 332449 ATGCAGATTTTCGTTAAGACCCTCACGGGGAAGACCATCACGTTGGAAGTAGAGTCCTCC 332390 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | ||| ||| ||| ||||| ||||| | || || || ||| Sbjct 332389 GATACCATCGACAACGTGAAAGCAAAGATTCAGGACAAGGAAGGCATTCCTCCTGACCAA 332330 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || | || |||||||| || || ||||||||| ||||| | |||||||| Sbjct 332329 CAACGCCTCATCTTTGCCGGAAAGCAGTTGGAAGACGGCCGCACACTCTCAGATTACAAT 332270 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 332269 ATTCAGAAGGAATCCAC 332253 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||||||||| || || ||||| | ||||| || || | Sbjct 332221 ATGCAGATTTTTGTCAAGACCCTCACGGGTAAGACCATCACGTTGGAAGTGGAATCATCC 332162 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||||| ||||| ||||| | || || ||||| Sbjct 332161 GACACCATCGACAACGTGAAGGCGAAAATCCAAGACAAGGAAGGCATTCCCCCTGATCAG 332102 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC--TTTAGGCGATTACA 23788 || || | || ||||| || || || ||||||||| ||||| ||| || |||||| Sbjct 332101 CAACGCCTTATCTTTGCTGGAAAGCAGTTGGAAGACGGTCGCACGCTTTCGG--ATTACA 332044 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || ||||| || Sbjct 332043 ACATCCAGAAGGAGTCTAC 332025 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/197 (71%), Gaps = 10/197 (5%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| ||||||||||| || || |||||| | || || || || | Sbjct 331993 ATGCAGATTTTTGTTAAGACCCTCACGGGGAAGACCATCACTTTGGAGGTGGAGTCATCC 331934 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| | || | ||| ||| ||||| ||||| | || || || || Sbjct 331933 GACACTATCGACAATGTGAAGGC-AAAGATTCAGGACAAGGAAGGCATTCCTCCTGACCA 331875 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA----CGAACGCACTTTAGGCGATT 23785 ||| || | || || || || || || ||||||| || |||| || | |||| Sbjct 331874 ACAACGCCTGATCTTCGCAGGAAAGCAGTTGGAAGATGGTCGTACGCTCTCT----GATT 331819 Query 23786 ACAACATACAAAAAGAG 23802 | ||||| ||||| ||| Sbjct 331818 ATAACATCCAAAAGGAG 331802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338003214787400