Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taiwanofungus_20camphoratus_20[genbank_20GCA_5F000766995.1_202014- 10-15] 360 sequences; 32,155,604 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq306 174 2e-38 seq1 168 8e-37 seq2 86.0 8e-12 >seq306 Length=1616116 Score = 174 bits (192), Expect = 2e-38 Identities = 377/561 (67%), Gaps = 6/561 (1%) Strand=Plus/Plus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 |||||| || || ||| ||||| ||||| || | ||| || | || || || ||||| Sbjct 904147 CAAACACGCAAAGTCGGTGTGCATGCCCTCATCACGACTTATCAGCTCATTCGAGAACGT 904206 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 || || ||||| ||||||||||| || ||||| || ||||| || || || || || || Sbjct 904207 CAGACCAGGCATCAGGCCACGCTTCTTGAGCCAGAAAATGGACGCAAAGGACCCAGAGAA 904266 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT- 33756 ||| || || ||||||||||||||||||| |||| ||| || | | | | || Sbjct 904267 GAAAATGCCCTCTACTGCAGCAAAGGCAACGAGTCGCTCAGCAAATGTAGACTTCTTATC 904326 Query 33757 --GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 |||||| ||||| || |||||||| || | |||||| || || || ||||| Sbjct 904327 CGAAATCCACCGCAATGCCCAGTCAGCCTTCTTCTTGATACAAGGGATGGTGTCAATGGC 904386 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 | |||||||| | | | | | || || | ||||||||||| | ||| || Sbjct 904387 GTCAAAGAGATGTTCTCGCTGCTGAGGGTCCTTGATGTAAGTATCGATGAGAAGGGAGTA 904446 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 | || || |||||||| || || ||||| || || ||||| |||| || || | Sbjct 904447 TGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCATAGAAGCATCGCGCTTCTGC 904506 Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994 | ||| || || | | || || || | | ||| || || || || ||||| || Sbjct 904507 AGCCTGTACCTCATTGGAGAACCGCTCAACGAGATTCTCGTTGACAATGCCATCCGACGC 904566 Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTA--GTTTATT 34051 ||||| ||||| | ||||| | || | | | ||| | | || | | || || Sbjct 904567 AGCAAAGAACGCGAGAACATGCGAAAGGAAGTGTCTCTCGCCGTCGTTCAAGCGGTTGTT 904626 Query 34052 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 34111 ||| |||| | || || |||| || | || |||| ||||| || || ||||| || Sbjct 904627 CCAGTCATGCAGGTCCTTCGATAGGTCAATCTCCTCCATCGTCCAGAAAGAAGCCTCGGC 904686 Query 34112 CTTTTTATACATATTCCAGAT 34132 ||| |||||||| | |||||| Sbjct 904687 CTTCTTATACATCTGCCAGAT 904707 >seq1 Length=2218769 Score = 168 bits (186), Expect = 8e-37 Identities = 377/563 (67%), Gaps = 10/563 (2%) Strand=Plus/Minus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 ||| ||||| || ||| |||| ||||||||| | || || | || || || ||||| Sbjct 2184301 CAAGCATGCAAAGTCGGTATGCATACCCTCGTCACGGCTGATAAGCTCATTTGAGAACGT 2184242 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 ||| || ||||| | ||| | ||| || ||||| || || || || || ||||| ||||| Sbjct 2184241 GAGACCAGGCATCAAGCCTCTCTTCTTCAGCCAGAAAATCGAGGCAAAAGATCCTGAAAA 2184182 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG 33757 |||||| || || || ||||| ||||||| || | ||| | | || | | || | Sbjct 2184181 GAAGATACCCTCAACAGCAGCGAAGGCAACGAGCCGCTCAGC--GAACGCAGATTTCTGG 2184124 Query 33758 T-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33812 | |||||| | ||||| || |||||||| || | || || || || || || Sbjct 2184123 TCCGAGATCCACCGCAGCGCCCAGTCAGCCTTCTTCTTGATGCATGGAATAGTGTCAATA 2184064 Query 33813 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33872 |||| || || | | | | || || | ||||| ||||| | |||| Sbjct 2184063 GCATCGAAAAGGTGCTCCCGCTGCGCAGGGTCCTTGATGTAAGTGTCGATAAGAAGAGAG 2184004 Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932 || | || || |||||||| || || || || || |||||||| || | |||||| Sbjct 2184003 TATGTCTCAGAGTGAATGTTCTCCATCATGATTTGGAAACCGTAGAAGCAGCGGGCCTCG 2183944 Query 33933 GTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTG 33992 | || ||||||||| | | ||||| || | | || ||||| || || ||||| Sbjct 2183943 GCAACCTGCACTTCATTCGAGAATCGCTCAACAAGGTTCTCATTGACGATGCCATCCGAC 2183884 Query 33993 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGT--GTTAGTTTA 34049 || ||||| || || | || || |||||| | |||| | | || || | || Sbjct 2183883 GCAGCAAAGAAAGCAAGAACGTGAGATATAAAGTGACGTTCGCCGTCGTTCATTCGGTTG 2183824 Query 34050 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 34109 ||||| |||| || || || || | ||| || || |||| |||||| || || ||||| Sbjct 2183823 TTCCAGTCATGGAGGTCCTTCGAGAGATCAACCTCCTCCATTGTCCAGAAGGAGGCCTCA 2183764 Query 34110 GCCTTTTTATACATATTCCAGAT 34132 |||||||| ||||| |||||| Sbjct 2183763 GCCTTTTTGTACATCCGCCAGAT 2183741 >seq2 Length=1168275 Score = 86.0 bits (94), Expect = 8e-12 Identities = 163/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 63279 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCC 63337 |||||||| |||||||| || || ||| || || || | || | ||||| || || Sbjct 515900 AAGAGATCCGGAATCCAGAGGGC-ATAGAAGAGGTCCCGTGCACGTACCTCCTCCTTGCC 515842 Query 63338 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63397 |||||| ||||| | |||| | | || ||| ||||| || || | ||| || Sbjct 515841 ATGATTCTTGCGGAGATCCAAGAACTCAAAAACGTCATCGTGCCAGGGCTCGAGGTAGAT 515782 Query 63398 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63457 || | | | ||||| || ||||| |||||||| || | || | ||| || || ||| Sbjct 515781 CGCGAAAGCGCCAGGACGCTTGTTGCCTCCCTGGTCAACATAGCGAGCCGTTGCATCATA 515722 Query 63458 AACTCTCAACATTGGAATAATACCGTTTGATATA-CCATTGGTACCGGAGATATA 63511 | | | ||| |||| |||||| ||||| ||| ||||||||||||| ||||| Sbjct 515721 TGCACGGAGCATAGGAACAATACCATTTGA-ATAGCCATTGGTACCGGCAATATA 515668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629814765820800