Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Taiwanofungus_20camphoratus_20[genbank_20GCA_5F000766995.1_202014- 10-15] 360 sequences; 32,155,604 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq306 183 4e-41 seq1 163 4e-35 seq2 84.2 3e-11 >seq306 Length=1616116 Score = 183 bits (202), Expect = 4e-41 Identities = 379/561 (68%), Gaps = 6/561 (1%) Strand=Plus/Plus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 |||||| || || ||| ||||| ||||| || | ||| || || || || || ||||| Sbjct 904147 CAAACACGCAAAGTCGGTGTGCATGCCCTCATCACGACTTATCAGCTCATTCGAGAACGT 904206 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 || || ||||| ||||||||||| || ||||| || ||||| || || || ||||| || Sbjct 904207 CAGACCAGGCATCAGGCCACGCTTCTTGAGCCAGAAAATGGACGCAAAGGACCCAGAGAA 904266 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT- 33478 ||| || || ||||||||||||||||||| |||| ||| || | | | | || Sbjct 904267 GAAAATGCCCTCTACTGCAGCAAAGGCAACGAGTCGCTCAGCAAATGTAGACTTCTTATC 904326 Query 33479 --GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536 |||||| ||||| || |||||||| || | |||||| || || || ||||| Sbjct 904327 CGAAATCCACCGCAATGCCCAGTCAGCCTTCTTCTTGATACAAGGGATGGTGTCAATGGC 904386 Query 33537 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33596 | |||||||| | | | | | || || | ||||||||||| | ||| || Sbjct 904387 GTCAAAGAGATGTTCTCGCTGCTGAGGGTCCTTGATGTAAGTATCGATGAGAAGGGAGTA 904446 Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33656 | || || |||||||| || || ||||| || || ||||| |||| || || | Sbjct 904447 TGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCATAGAAGCATCGCGCTTCTGC 904506 Query 33657 AATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGC 33716 | |||||| || | | || || || | | ||| || || || || || || || Sbjct 904507 AGCCTGTACCTCATTGGAGAACCGCTCAACGAGATTCTCGTTGACAATGCCATCCGACGC 904566 Query 33717 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTA--GTTTATT 33773 ||||| ||||| | ||||| | || | | | ||| | | || | | || || Sbjct 904567 AGCAAAGAACGCGAGAACATGCGAAAGGAAGTGTCTCTCGCCGTCGTTCAAGCGGTTGTT 904626 Query 33774 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33833 ||| |||| | || || |||| || | || |||| ||||| || || ||||| || Sbjct 904627 CCAGTCATGCAGGTCCTTCGATAGGTCAATCTCCTCCATCGTCCAGAAAGAAGCCTCGGC 904686 Query 33834 CTTTTTATACATGTTCCAGAT 33854 ||| |||||||| | |||||| Sbjct 904687 CTTCTTATACATCTGCCAGAT 904707 >seq1 Length=2218769 Score = 163 bits (180), Expect = 4e-35 Identities = 376/563 (67%), Gaps = 10/563 (2%) Strand=Plus/Minus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 ||| ||||| || ||| |||| ||||||||| | || || || || || || ||||| Sbjct 2184301 CAAGCATGCAAAGTCGGTATGCATACCCTCGTCACGGCTGATAAGCTCATTTGAGAACGT 2184242 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 ||| || ||||| | ||| | ||| || ||||| || || || || || ||||| ||||| Sbjct 2184241 GAGACCAGGCATCAAGCCTCTCTTCTTCAGCCAGAAAATCGAGGCAAAAGATCCTGAAAA 2184182 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG 33479 |||||| || || || ||||| ||||||| || | ||| | | || | | || | Sbjct 2184181 GAAGATACCCTCAACAGCAGCGAAGGCAACGAGCCGCTCAGC--GAACGCAGATTTCTGG 2184124 Query 33480 T-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33534 | |||||| | ||||| || |||||||| || | || || || || || || Sbjct 2184123 TCCGAGATCCACCGCAGCGCCCAGTCAGCCTTCTTCTTGATGCATGGAATAGTGTCAATA 2184064 Query 33535 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33594 |||| || || | | | | || || | ||||| ||||| | |||| Sbjct 2184063 GCATCGAAAAGGTGCTCCCGCTGCGCAGGGTCCTTGATGTAAGTGTCGATAAGAAGAGAG 2184004 Query 33595 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33654 || | || || |||||||| || || || || || |||||||| || | |||||| Sbjct 2184003 TATGTCTCAGAGTGAATGTTCTCCATCATGATTTGGAAACCGTAGAAGCAGCGGGCCTCG 2183944 Query 33655 GTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTG 33714 | || ||| ||||| | | ||||| || | | || ||||| || || || || Sbjct 2183943 GCAACCTGCACTTCATTCGAGAATCGCTCAACAAGGTTCTCATTGACGATGCCATCCGAC 2183884 Query 33715 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGT--GTTAGTTTA 33771 || ||||| || || | || || |||||| | |||| | | || || | || Sbjct 2183883 GCAGCAAAGAAAGCAAGAACGTGAGATATAAAGTGACGTTCGCCGTCGTTCATTCGGTTG 2183824 Query 33772 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 33831 ||||| |||| || || || || | ||| || || |||| |||||| || || ||||| Sbjct 2183823 TTCCAGTCATGGAGGTCCTTCGAGAGATCAACCTCCTCCATTGTCCAGAAGGAGGCCTCA 2183764 Query 33832 GCCTTTTTATACATGTTCCAGAT 33854 |||||||| ||||| |||||| Sbjct 2183763 GCCTTTTTGTACATCCGCCAGAT 2183741 >seq2 Length=1168275 Score = 84.2 bits (92), Expect = 3e-11 Identities = 165/237 (70%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT---TCCTCGTTT 63284 |||||||| |||||||| || || ||| | ||| || || | | || ||||| || Sbjct 515900 AAGAGATCCGGAATCCAGAGGGC-ATAGA-AGAGGTCCCGTGC-ACGTACCTCCTCCTTG 515844 Query 63285 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63344 || |||||| ||||| | |||| | | || ||| ||||| || || | ||| Sbjct 515843 CCATGATTCTTGCGGAGATCCAAGAACTCAAAAACGTCATCGTGCCAGGGCTCGAGGTAG 515784 Query 63345 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63404 || || | | | ||||| || ||||| |||||||| || | || | ||| || || | Sbjct 515783 ATCGCGAAAGCGCCAGGACGCTTGTTGCCTCCCTGGTCAACATAGCGAGCCGTTGCATCA 515724 Query 63405 TAAACTCTCAACATTGGAATAATACCGTTTGATATA-CCATTGGTACCGGAGATATA 63460 || | | | ||| |||| |||||| ||||| ||| ||||||||||||| ||||| Sbjct 515723 TATGCACGGAGCATAGGAACAATACCATTTGA-ATAGCCATTGGTACCGGCAATATA 515668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944396737600