Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20J132_20[genbank_20GCA_5F001263195.1_202015-08- 10] 2,335 sequences; 67,296,805 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq120 183 3e-41 seq654 120 3e-22 seq666 116 3e-21 seq641 91.5 1e-13 >seq120 Length=370717 Score = 183 bits (202), Expect = 3e-41 Identities = 382/565 (68%), Gaps = 13/565 (2%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | ||||||||||||||||||||||| || ||||| | || || | || || Sbjct 288107 ATATGGCAAATGTACAAAAAGGCAGAAGCATCCTTCTGGACGGCTGAGGAGATGGATCTT 288048 Query 57630 TCTAAGGATCTGAGCGATTGG---GATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || ||||| || ||||||| || |||||| || |||| | | ||||| Sbjct 288047 TCCAAGGACCTTTACGATTGGAATGAACGCCTCAATGACAATGAGCGCCACTTTATCTCG 287988 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| ||||| ||||| || || |||||||| ||||| ||||| || | ||||| | Sbjct 287987 CACGTTTTGGCTTTTTTTGCTGCTTCCGATGGCATTGTCAACGAAAACCTTGTCGAGCGC 287928 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || | ||||| || | | || || | || || || || ||||| | || Sbjct 287927 TTCTCCAATGAAGTCCAGGCAGCTGAAGCTCGCTGTTTCTATGGCTTTCAGATCATGATG 287868 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 |||||| | ||||| |||| ||||| || || || || || ||| | |||||| | | Sbjct 287867 GAAAACATTCATTCCGAAACATATTCTCTCCTTATAGACACTTACATCAAGGACCAAGCT 287808 Query 57867 GAG-AAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGA 57925 ||| ||| || || | || |||||||| || ||| || |||||| || Sbjct 287807 GAGCGCGAGTA-CCTCTTTGATGCCATCGAAACCATTCCCTGTATTAAACGGAAGGCTGA 287749 Query 57926 GTGGTCAATCAAATGGA----TAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCG 57981 ||| | | || |||| | | ||| | | || |||||||| || || | | Sbjct 287748 ATGGGCTCTGAAGTGGATCTCTGACAAG----AACTCTACTTTCGCCGAACGGTTAGTTG 287693 Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGA 58041 | || || || || ||||| || ||||| || ||| |||||| |||| || ||| | | Sbjct 287692 CATTTGCGGCTGTGGAAGGCATCTTCTTCTCAGGCTCCTTTGCATCAATCTTCTGGCTAA 287633 Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 ||||||| || || ||||||||| |||| || |||||| | || || || |||| Sbjct 287632 AGAAACGTGGTCTCATGCCCGGCTTGACTTTCTCAAACGAGCTTATCAGCCGTGATGAGG 287573 Query 58102 GTCTCCATACTGATTTTGCGTGCCT 58126 || | || || || ||||| ||||| Sbjct 287572 GTATGCACACCGACTTTGCATGCCT 287548 >seq654 Length=437428 Score = 120 bits (132), Expect = 3e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 |||||||| || | ||| || || ||||| || || || || || || || || || ||| Sbjct 47871 AAAAGATCAGGCACCCAAAGGGCATAGAAAAGATCTCGCGCACGGACTTCTTCCTTTCCG 47930 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 ||||||| ||||||| | || || || ||||| |||||||| || |||| ||| | Sbjct 47931 TGGTTCTTTCTCAAATCAAGGAACTCGAAGACGTCGGCATGCCAGGGTTCGATGTAGATC 47990 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTG 23527 || || || ||||||| ||| ||||| || || ||||||||||| || ||| Sbjct 47991 GCGAAAGCACCCGGTCGCTTGTTGCCTCCTTGGTCGACGTAACGAGCAGTG 48041 >seq666 Length=522490 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| |||| || || || || || |||| |||||| |||| Sbjct 282467 ATGCAAATTTTCGTCAAGACGTTGACGGGGAAGACCATTACGCTCGAGGTTGAATCGTCG 282408 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| || ||| ||||||||||||| | || ||||||||| Sbjct 282407 GACACAATTGATAACGTCAAGGCGAAAATTCAGGACAAGGAAGGCATCCCCCCCGACCAG 282348 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || | || || || || |||||| | || ||| ||| | ||||| ||| Sbjct 282347 CAACGCTTGATCTTTGCCGGGAAACAGCTTGAGGACGGCCGCACTCTTTCTGATTACAAC 282288 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| ||||| ||||| || ||||| || || Sbjct 282287 ATTCAGAAAGAGTCGACGCTCCATCTTGTTCT 282256 Score = 105 bits (116), Expect = 6e-18 Identities = 153/215 (71%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||||||||| || || ||||| | || |||||| ||||| Sbjct 282747 ATGCAAATTTTTGTCAAGACTCTGACAGGAAAGACCATCACTCTTGAGGTTGAATCGTCC 282688 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| | || |||||||||||| | || ||||| ||| Sbjct 282687 GACACTATTGATAACGTCAAGGCCAAGATTCAGGACAAGGAAGGTATACCTCCCGATCAG 282628 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || | || ||||| ||||| || | ||||| | ||| | || || || Sbjct 282627 CAACGCTTGATCTTCGCCGGCAAGCAACTTGAAGATGGTCGCACTCTCTCGGACTACAAT 282568 Query 31373 ATTCAAAAAGAATCGACTCTTCATC-TGGTACTTA 31406 ||||| || ||||| || || || | |||||| || Sbjct 282567 ATTCAGAAGGAATCCACCCTCCACCTTGGTACGTA 282533 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| || || || || ||||| || | || || || |||| Sbjct 282239 ATGCAGATTTTTGTGAAGACGCTCACCGGAAAGACGATTACGTTGGAAGTGGAGTCGTCG 282180 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| || || |||||||||||| | ||||| |||||| Sbjct 282179 GACACGATTGACAACGTGAAAGCGAAGATTCAGGACAAGGAAGGTATTCCGCCTGACCAG 282120 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || ||||| || || ||||| || | |||||| | ||| | ||| |||||| Sbjct 282119 CAACGCCTAATCTTTGCGGGCAAGCAACTCGAAGACGGGAGGACGCTTTCCGACTATAAC 282060 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGG 31400 || || || || || || ||||||| Sbjct 282059 ATACAGAAGGAGAGCACCCTGCATCTGG 282032 >seq641 Length=242067 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||||||||| ||||| || |||||| | || || || | || Sbjct 73861 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACTATCACCCTTGAGGTCGAGTCATCA 73920 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| | ||| ||| || || || | || || || || Sbjct 73921 GATACCATCGACAACGTCAAGGCTAAAATCCAGGATAAAGAGGGTATCCCTCCTGATCAA 73980 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || ||||| || ||||| |||||||| | || || | | | ||| | ||| || || Sbjct 73981 CAACGTCTCATCTTCGCAGGCAAACAACTCGAGGA-TGGACGCACTCTCTCCGACTACAA 74039 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || |||||||| || |||||||| || ||| Sbjct 74040 CATCCAGAAAGAATCCACCCTTCATCTCGTCCTT 74073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445753389193200