Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20J132_20[genbank_20GCA_5F001263195.1_202015-08- 10] 2,335 sequences; 67,296,805 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq120 179 5e-40 >seq120 Length=370717 Score = 179 bits (198), Expect = 5e-40 Identities = 377/558 (68%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 ||||| || ||| ||||| |||||| || | || || | ||||| || || || | Sbjct 287551 CATGCAAAGTCGGTGTGCATACCCTCATCACGGCTGATAAGCTCGTTTGAGAAAGTCAAG 287610 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| || ||||| || || ||||| || || || || || || || || |||||| Sbjct 287611 CCGGGCATGAGACCACGTTTCTTTAGCCAGAAGATTGATGCAAAGGAGCCTGAGAAGAAG 287670 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGT 33758 || ||||| || || ||||| |||| | | || | || | | | |||| Sbjct 287671 ATGCCTTCCACAGCCGCAAATGCAACTAACCGTTCGGCGAAAGTAGAGTTCTTGTCAGAG 287730 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 |||||||| ||||||| || |||||| ||| | ||| || || ||||| ||||||| | Sbjct 287731 ATCCACTTCAGAGCCCATTCAGCCTTCCGTTTAATACAGGGAATGGTTTCGATGGCATCA 287790 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 ||||| || | ||| || || | ||||| || || | ||| ||| || Sbjct 287791 AAGAGGTACTCGCGCTCAGCTTGGTCCTTGATGTAAGTGTCTATAAGGAGAGAATATGTT 287850 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || |||||||||||||| || |||||||| || |||||||| | ||| || | | Sbjct 287851 TCGGAATGAATGTTTTCCATCATGATCTGAAAGCCATAGAAACAGCGAGCTTCAGCTGCC 287910 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 || ||||| | | || || || | | ||||| || || || ||||| || ||| Sbjct 287911 TGGACTTCATTGGAGAAGCGCTCGACAAGGTTTTCGTTGACAATGCCATCGGAAGCAGCA 287970 Query 33999 AAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTC-TGGTGTTAGTTTATTCCA 34054 ||||| ||||| || || ||||| | | | ||| | | | ||| |||||| Sbjct 287971 AAAAAAGCCAAAACGTGCGAGATAAAGTGGCGCTCATTGTCATTGAG-GCGTTCATTCCA 288029 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 ||| | | || || || | ||||| || || | ||||| || ||||| |||||||| Sbjct 288030 ATCGTAAAGGTCCTTGGAAAGATCCATCTCCTCAGCCGTCCAGAAGGATGCTTCTGCCTT 288089 Query 34115 TTTATACATATTCCAGAT 34132 ||| ||||| | ||| || Sbjct 288090 TTTGTACATTTGCCATAT 288107 Score = 172 bits (190), Expect = 7e-38 Identities = 377/559 (67%), Gaps = 8/559 (1%) Strand=Plus/Minus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 |||||| ||||| ||| || || ||||| | ||| || | ||| || || || ||||| Sbjct 289772 ACATGCAAAATCCGTGTGAAGGCCTTCGTCGCGACTGATGAGTTCATTGGAGAAAGTGAG 289713 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| | |||||||| || | |||||| || | ||| || || || || || || Sbjct 289712 ACCAGGCATCAAACCACGCTTCTTGATCCAAAAAATAGCAGCAAAGGACCCAGAGAAAAA 289653 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCT--GTCATG 33757 ||||||||||| || ||||| |||| ||||| || || | || | | ||| Sbjct 289652 TATTCCTTCTACAGCGGCAAAAGCAACAAGTCGTTCCGCAAAGGTGGACTGTTGGTCTGA 289593 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 |||||| | ||||||| || || || || ||||| | || ||||| ||||| | Sbjct 289592 TATCCATCTAAGAGCCCAGTCAGCTTTACGCTTGACACATGAGATGGTTTCGATGGCGTC 289533 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 || |||| || ||| | ||| || | || || ||||| | ||| || | Sbjct 289532 GAATAGATGTTTCCGTTCTTCTGGATCCTTGATGTAGGTGTCGATAAGTAGAGAGTAAGT 289473 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 |||||| |||| ||||| || || || || |||||||| || | || || | | Sbjct 289472 TTCCGAGTGAACATTTTCCATCATTATTTGGAAGCCGTAGAAGCACCGTGCTTCAGCTAC 289413 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 ||| | ||| | | |||||||| | || |||||||| || || || || || Sbjct 289412 CTGAATTTCACTGGAGAATCGTTCAAGGAGGTTCTCATTCACAATGCCGTCGGAAGCAGC 289353 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTT---ATTCC 34053 ||| || || | || || || ||||| |||| |||| ||| || || ||||| Sbjct 289352 AAAGAATGCGAGGACGTGAGAGATGAAATACCGTTCG-CTGGAGTTGAGCTTATGATTCC 289294 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 |||| ||| ||| | | | ||| | ||| || | ||||||||||| |||| ||||| Sbjct 289293 AATCCATGAGATCGTGGCAGAGATCTATTTCCTCTGCGGTCCAAAATGACGCCTGTGCCT 289234 Query 34114 TTTTATACATATTCCAGAT 34132 ||||||| | |||||| || Sbjct 289233 TTTTATAAAAATTCCATAT 289215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629799217198800