Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20J132_20[genbank_20GCA_5F001263195.1_202015-08- 10] 2,335 sequences; 67,296,805 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq120 187 3e-42 >seq120 Length=370717 Score = 187 bits (206), Expect = 3e-42 Identities = 378/561 (67%), Gaps = 14/561 (2%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 ||||| || ||| ||||| ||||||||| | || || | ||||| || || || | Sbjct 287551 CATGCAAAGTCGGTGTGCATACCCTCATCACGGCTGATAAGCTCGTTTGAGAAAGTCAAG 287610 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| || ||||| || || ||||| || || || ||||| || || || |||||| Sbjct 287611 CCGGGCATGAGACCACGTTTCTTTAGCCAGAAGATTGATGCAAAGGAGCCTGAGAAGAAG 287670 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT---GTCATGT 42241 || ||||| || |||||||| |||| | | || | || | | |||| Sbjct 287671 ATGCCTTCCACAGCCGCAAATGCAACTAACCGTTCGGCGAAAGTAGAGTTCTTGTCAGAG 287730 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 |||||||| ||||||| || |||||| ||| | ||| || || ||||| ||||||| | Sbjct 287731 ATCCACTTCAGAGCCCATTCAGCCTTCCGTTTAATACAGGGAATGGTTTCGATGGCATCA 287790 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 ||||| || | ||| || || | || || || || | ||| ||| || Sbjct 287791 AAGAGGTACTCGCGCTCAGCTTGGTCCTTGATGTAAGTGTCTATAAGGAGAGAATATGTT 287850 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || |||||||||||||| || |||||||| || |||||||| | || || | || Sbjct 287851 TCGGAATGAATGTTTTCCATCATGATCTGAAAGCCATAGAAACAGCGAGCTTCAGCTGCC 287910 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 || ||||| | | || || || | | |||||||| || || || || || ||| Sbjct 287911 TGGACTTCATTGGAGAAGCGCTCGACAAGGTTTTCGTTGACAATGCCATCGGAAGCAGCA 287970 Query 42482 AAAAACGCCAATACATGTTTTATAAAAT-------ATTTTTCGTCCGGTGTTAATTTATT 42534 ||||| ||||| || || ||||| | ||| | | || | || ||| Sbjct 287971 AAAAAAGCCAAAACGTGCGAGATAAAGTGGCGCTCATTGTCATTGAGGCG----TTCATT 288026 Query 42535 CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594 |||||| | | || || || | ||| | || || ||||||| || ||||||||||| Sbjct 288027 CCAATCGTAAAGGTCCTTGGAAAGATCCATCTCCTCAGCCGTCCAGAAGGATGCTTCTGC 288086 Query 42595 CTTTTTATACATATTCCAGAT 42615 |||||| ||||| | ||| || Sbjct 288087 CTTTTTGTACATTTGCCATAT 288107 Score = 185 bits (204), Expect = 1e-41 Identities = 379/560 (68%), Gaps = 10/560 (2%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 |||||| ||||| ||| || || || || | ||| || | ||| ||||| || ||||| Sbjct 289772 ACATGCAAAATCCGTGTGAAGGCCTTCGTCGCGACTGATGAGTTCATTGGAGAAAGTGAG 289713 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 || ||||| | |||||||| || | |||||| |||| ||||| || ||||| || || Sbjct 289712 ACCAGGCATCAAACCACGCTTCTTGATCCAAAAAATAGCAGCAAAGGACCCAGAGAAAAA 289653 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT----GTCAT 42239 ||||||||||| || ||||| |||| ||||| || || || | ||| ||| Sbjct 289652 TATTCCTTCTACAGCGGCAAAAGCAACAAGTCGTTCCGCA-AAGGTGGACTGTTGGTCTG 289594 Query 42240 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 42299 |||||| | ||||||| || || || || ||||| | || ||||| ||||| | Sbjct 289593 ATATCCATCTAAGAGCCCAGTCAGCTTTACGCTTGACACATGAGATGGTTTCGATGGCGT 289534 Query 42300 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACA 42359 || |||| || ||| | ||| || | || || ||||| | ||| || Sbjct 289533 CGAATAGATGTTTCCGTTCTTCTGGATCCTTGATGTAGGTGTCGATAAGTAGAGAGTAAG 289474 Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAA 42419 |||| || |||| ||||| || || || || |||||||| || | || || | | Sbjct 289473 TTTCCGAGTGAACATTTTCCATCATTATTTGGAAGCCGTAGAAGCACCGTGCTTCAGCTA 289414 Query 42420 CCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTG 42479 |||| | ||| | | ||||||||| | || || ||||| || ||||| || | Sbjct 289413 CCTGAATTTCACTGGAGAATCGTTCAAGGAGGTTCTCATTCACAATGCCGTCGGAAGCAG 289354 Query 42480 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA----TTTATTC 42535 |||| || || | || || || ||||| |||| | || ||| | | |||| Sbjct 289353 CAAAGAATGCGAGGACGTGAGAGATGAAATACCGTTCG-CTGGAGTTGAGCTTATGATTC 289295 Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 ||||| ||| ||| | | | ||||| ||| ||| | ||||||||||| || | |||| Sbjct 289294 CAATCCATGAGATCGTGGCAGAGATCTATTTCCTCTGCGGTCCAAAATGACGCCTGTGCC 289235 Query 42596 TTTTTATACATATTCCAGAT 42615 |||||||| | |||||| || Sbjct 289234 TTTTTATAAAAATTCCATAT 289215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671119611124600