Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20J132_20[genbank_20GCA_5F001263195.1_202015-08- 10] 2,335 sequences; 67,296,805 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq666 105 7e-18 seq641 87.8 2e-12 >seq666 Length=522490 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||||| ||| | ||| | || || ||||| || ||||||||||| Sbjct 282241 CCACCGCGGAGACGCAGAACAAGATGGAGCGTCGACTCTTTCTGAATGTTGTAATCAGAA 282300 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||| || || ||||| || ||| |||||| |||||||| ||||| || Sbjct 282301 AGAGTGCGGCCGTCCTCAAGCTGTTTCCCGGCAAAGATCAAGCGTTGCTGGTCGGGGGGG 282360 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| |||||| || | | || | ||||||| | ||| || Sbjct 282361 ATGCCTTCCTTGTCCTGAATTTTCGCCTTGACGTTATCAATTGTGTCCGACGATTCAACC 282420 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || ||||| || || ||||| ||||||||| Sbjct 282421 TCGAGCGTAATGGTCTTCCCCGTCAACGTCTTGACGAAAATTTGCATA 282468 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 142994 TCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAG 143053 || || |||||||| || ||| | || ||| |||||||||||| || || ||| || Sbjct 282049 TCCTTCTGTATGTTATAGTCGGAAAGCGTCCTCCCGTCTTCGAGTTGCTTGCCCGCAAAG 282108 Query 143054 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT 143113 || || |||||||| || || || || ||||| ||||| ||| || ||| | | Sbjct 282109 ATTAGGCGTTGCTGGTCAGGCGGAATACCTTCCTTGTCCTGAATCTTCGCTTTCACGTTG 282168 Query 143114 TCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACG 143173 || | |||||||| | || ||||| | || | |||||| ||||| | || || || Sbjct 282169 TCAATCGTGTCCGACGACTCCACTTCCAACGTAATCGTCTTTCCGGTGAGCGTCTTCACA 282228 Query 143174 AATATTTGCATA 143185 || || |||||| Sbjct 282229 AAAATCTGCATA 282240 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| ||||| || || || |||||| |||||||||||||||||||| ||||| ||| Sbjct 282593 TCTTCAAGTTGCTTGCCGGCGAAGATCAAGCGTTGCTGATCGGGAGGTATACCTTCCTTG 282652 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || || | | || | ||||| | | ||| || |||| ||| | Sbjct 282653 TCCTGAATCTTGGCCTTGACGTTATCAATAGTGTCGGACGATTCAACCTCAAGAGTGATG 282712 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| || |||| || || || || ||||||||| Sbjct 282713 GTCTTTCCTGTCAGAGTCTTGACAAAAATTTGCATA 282748 >seq641 Length=242067 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | || | || | ||||| || |||||||| || |||||||| ||| Sbjct 74088 GCCTCCACGGAGGCGAAGGACGAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGA 74029 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | |||| || | || ||||||||||| || || |||| |||||||| ||||| |||| Sbjct 74028 GAGAGTGCGTCCA-TCCTCGAGTTGTTTGCCTGCGAAGATGAGACGTTGTTGATCAGGAG 73970 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || || ||||| || ||||| || | | || | || || | | || | Sbjct 73969 GGATACCCTCTTTATCCTGGATTTTAGCCTTGACGTTGTCGATGGTATCTGATGACTCGA 73910 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 | |||| || | |||||||| |||| || || ||||| || |||||| Sbjct 73909 CCTCAAGGGTGATAGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCATA 73860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506999601517200