Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20J132_20[genbank_20GCA_5F001263195.1_202015-08- 10] 2,335 sequences; 67,296,805 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq666 98.7 7e-16 seq641 86.0 5e-12 >seq666 Length=522490 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || || || || ||||| || ||| | | | ||||| | ||| Sbjct 282545 TGGAGGGTGGATTCCTTCTGAATATTGTAGTCCGAGAGAGTGCGACCATCTTCAAGTTGC 282604 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| | ||||| ||||| || ||| || || ||||| ||||| ||| ||| Sbjct 282605 TTGCCGGCGAAGATCAAGCGTTGCTGATCGGGAGGTATACCTTCCTTGTCCTGAATCTTG 282664 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || || || ||| ||| || || | || ||||| || |||||| Sbjct 282665 GCCTTGACGTTATCAATAGTGTCGGACGATTCAACCTCAAGAGTGATGGTCTTTCCTGTC 282724 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 ||||| || ||||||||||||||| Sbjct 282725 AGAGTCTTGACAAAAATTTGCATA 282748 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||||||||| || || || || || |||||||| || | | | ||||| | || Sbjct 282822 ATGAAGGGTAGATTCCTTCTGAATATTGTAATCAGAAAGTGTACGACCATCTTCGAGCTG 282881 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| || ||| | ||||||||||| ||||| ||||| ||||| || || || || Sbjct 282882 TTTTCCGGCGAAGATCAAACGTTGCTGGTCAGGGGGAATACCTTCCTTATCTTGGATCTT 282941 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | | || ||| | || ||||||||| || || || | ||| ||||| || || || Sbjct 282942 GGTTTTGACATTGTCGATGGTATCGGAGGACTCCACCTCAAGGGTGATGGTCTTCCCAGT 283001 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||||||||| ||||| Sbjct 283002 CAAGGTCTTTACAAAAATCTGCAT 283025 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| || || || ||||| || ||||||||||| ||| | | |||| || Sbjct 282258 AACAAGATGGAGCGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTC 282317 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||| || || | ||||| ||||| |||||| || || ||||| ||||| Sbjct 282318 AAGCTGTTTCCCGGCAAAGATCAAGCGTTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTG 282377 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| ||| || | || || || || ||| || || | |||||||| || Sbjct 282378 AATTTTCGCCTTGACGTTATCAATTGTGTCCGACGATTCAACCTCGAGCGTAATGGTCTT 282437 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| || || || |||||||||||| Sbjct 282438 CCCCGTCAACGTCTTGACGAAAATTTGCATA 282468 >seq641 Length=242067 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||||||||| ||||| || |||||||| ||| ||| | | | || || | ||| Sbjct 74064 ATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGTCCATCCTCGAGTTG 74005 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||| ||| | || | ||||||||| || || || || ||||| || ||||| Sbjct 74004 TTTGCCTGCGAAGATGAGACGTTGTTGATCAGGAGGGATACCCTCTTTATCCTGGATTTT 73945 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || | || |||||||| || || || | ||| || || || || || Sbjct 73944 AGCCTTGACGTTGTCGATGGTATCTGATGACTCGACCTCAAGGGTGATAGTCTTGCCAGT 73885 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 |||||| || || || || |||||| Sbjct 73884 CAGAGTCTTGACGAAGATCTGCATA 73860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362168893172235