Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20J132_20[genbank_20GCA_5F001263195.1_202015-08- 10] 2,335 sequences; 67,296,805 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq120 190 3e-43 >seq120 Length=370717 Score = 190 bits (210), Expect = 3e-43 Identities = 381/559 (68%), Gaps = 8/559 (1%) Strand=Plus/Minus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 |||||| ||||| ||| || || ||||| | ||| || ||||| ||||| || ||||| Sbjct 289772 ACATGCAAAATCCGTGTGAAGGCCTTCGTCGCGACTGATGAGTTCATTGGAGAAAGTGAG 289713 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| | |||||||| || | |||||| || | ||| || || ||||| || || Sbjct 289712 ACCAGGCATCAAACCACGCTTCTTGATCCAAAAAATAGCAGCAAAGGACCCAGAGAAAAA 289653 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCT--GTCATG 33479 ||||||||||| || ||||| |||| ||||| || || | || | | ||| Sbjct 289652 TATTCCTTCTACAGCGGCAAAAGCAACAAGTCGTTCCGCAAAGGTGGACTGTTGGTCTGA 289593 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 |||||| | ||||||| || || || || ||||| | || ||||| ||||| | Sbjct 289592 TATCCATCTAAGAGCCCAGTCAGCTTTACGCTTGACACATGAGATGGTTTCGATGGCGTC 289533 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 || |||| || ||| | ||| || | || || ||||| | ||| || | Sbjct 289532 GAATAGATGTTTCCGTTCTTCTGGATCCTTGATGTAGGTGTCGATAAGTAGAGAGTAAGT 289473 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 |||||| |||| ||||| || || || || |||||||| || | || || | | Sbjct 289472 TTCCGAGTGAACATTTTCCATCATTATTTGGAAGCCGTAGAAGCACCGTGCTTCAGCTAC 289413 Query 33660 CTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719 ||| | ||| | | |||||||| | || |||||||| || ||||| || || Sbjct 289412 CTGAATTTCACTGGAGAATCGTTCAAGGAGGTTCTCATTCACAATGCCGTCGGAAGCAGC 289353 Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTT---ATTCC 33775 ||| || || | || || || ||||| |||| |||| ||| || || ||||| Sbjct 289352 AAAGAATGCGAGGACGTGAGAGATGAAATACCGTTCG-CTGGAGTTGAGCTTATGATTCC 289294 Query 33776 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 |||| ||| ||| | | | ||||| ||| || | ||||||||||| |||| ||||| Sbjct 289293 AATCCATGAGATCGTGGCAGAGATCTATTTCCTCTGCGGTCCAAAATGACGCCTGTGCCT 289234 Query 33836 TTTTATACATGTTCCAGAT 33854 ||||||| | ||||| || Sbjct 289233 TTTTATAAAAATTCCATAT 289215 Score = 176 bits (194), Expect = 6e-39 Identities = 376/558 (67%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 ||||| || ||| ||||| |||||| || | || || || ||||| || || || | Sbjct 287551 CATGCAAAGTCGGTGTGCATACCCTCATCACGGCTGATAAGCTCGTTTGAGAAAGTCAAG 287610 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| || ||||| || || ||||| || || || || || || || || |||||| Sbjct 287611 CCGGGCATGAGACCACGTTTCTTTAGCCAGAAGATTGATGCAAAGGAGCCTGAGAAGAAG 287670 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGT 33480 || ||||| || || ||||| |||| | | || | || | | | |||| Sbjct 287671 ATGCCTTCCACAGCCGCAAATGCAACTAACCGTTCGGCGAAAGTAGAGTTCTTGTCAGAG 287730 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 |||||||| ||||||| || |||||| ||| | ||| || || ||||| ||||||| | Sbjct 287731 ATCCACTTCAGAGCCCATTCAGCCTTCCGTTTAATACAGGGAATGGTTTCGATGGCATCA 287790 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 ||||| || | ||| || || | ||||| || || | ||| ||| || Sbjct 287791 AAGAGGTACTCGCGCTCAGCTTGGTCCTTGATGTAAGTGTCTATAAGGAGAGAATATGTT 287850 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || |||||||||||||| || |||||||| || |||||||| | ||| || | | Sbjct 287851 TCGGAATGAATGTTTTCCATCATGATCTGAAAGCCATAGAAACAGCGAGCTTCAGCTGCC 287910 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 || ||||| | | || || || | | ||||| || || || || || || ||| Sbjct 287911 TGGACTTCATTGGAGAAGCGCTCGACAAGGTTTTCGTTGACAATGCCATCGGAAGCAGCA 287970 Query 33721 AAAAACGCCAATACATGTTTTATAAAAT---ATTTTTCGTC-TGGTGTTAGTTTATTCCA 33776 ||||| ||||| || || ||||| | | | ||| | | | ||| |||||| Sbjct 287971 AAAAAAGCCAAAACGTGCGAGATAAAGTGGCGCTCATTGTCATTGAG-GCGTTCATTCCA 288029 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 ||| | | || || || | ||| | || || | ||||| || ||||| |||||||| Sbjct 288030 ATCGTAAAGGTCCTTGGAAAGATCCATCTCCTCAGCCGTCCAGAAGGATGCTTCTGCCTT 288089 Query 33837 TTTATACATGTTCCAGAT 33854 ||| ||||| | ||| || Sbjct 288090 TTTGTACATTTGCCATAT 288107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622929017728600