Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20J132_20[genbank_20GCA_5F001263195.1_202015-08- 10] 2,335 sequences; 67,296,805 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq666 125 7e-24 seq641 91.5 1e-13 >seq666 Length=522490 Score = 125 bits (138), Expect = 7e-24 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | || || ||||| | |||||| ||||| |||||||||||||| | Sbjct 282240 ACCACCGCGGAGACGCAGAACAAGATGGAGCGTCGACTCTTTCTGAATGTTGTAATCAGA 282299 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| |||| |||||||| || |||||| | || | || ||||||||||| || Sbjct 282300 AAGAGTGCGGCCGTCCTCAAGCTGTTTCCCGGCAAAGATCAAGCGTTGCTGGTCGGGGGG 282359 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCC 64393 || ||||| || || || ||||| ||| || || | ||| | ||| || || Sbjct 282360 GATGCCTTCCTTGTCCTGAATTTTCGCCTTGACGTTATCAATTGTGT--CCGACGATTCA 282417 Query 64394 ACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | || | |||||| || ||||| || || |||||||||||||| Sbjct 282418 ACCTCGAGCGTAATGGTCTTCCCCGTCAACGTCTTGACGAAAATTTGCAT 282467 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || ||||| ||||| || | || ||||| | |||||||| ||||||||| Sbjct 282551 GTGGATTCCTTCTGAATATTGTAGTCCGAGAGAGTGCGACCATCTTCAAGTTGCTTGCCG 282610 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | || ||||| |||||||| || ||||| || || || || || ||| Sbjct 282611 GCGAAGATCAAGCGTTGCTGATCGGGAGGTATACCTTCCTTGTCCTGAATCTTGGCCTTG 282670 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || || | || || || | ||| | |||||| || |||| ||| Sbjct 282671 ACGTTATCAATAGTGTCGGACGATTCAACCTCAAGAGTGATGGTCTTTCCTGTCAGAGTC 282730 Query 64427 TTTACGAAAATTTGCAT 64443 || || ||||||||||| Sbjct 282731 TTGACAAAAATTTGCAT 282747 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | ||| ||||| || |||||||| || || | | ||||| | ||| Sbjct 283042 AGCACAAGATGCAACGTGGATTCCTTCTGAATGTTATAGTCGGAAAGCGTGCGGCCATCT 283101 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTC 64340 || || || || || ||| | ||||| || ||||||||||||||||||| Sbjct 283102 TCGAGTTGTTTACCAGCAAAGATGAGACGTTGCTGGTCGGGAGGAATTC 283150 >seq641 Length=242067 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || |||||||||| || || ||||| || ||||||||||| | Sbjct 73587 ACCACCACGCAGGCGGAGAACTAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGA 73528 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || | | | ||||| |||||||| || ||| | || || || || ||||||||||| Sbjct 73527 GAGCGTCCTCCCATCTTCGAGCTGCTTCCCAGCAAAGATAAGGCGTTGTTGGTCGGGAGG 73468 Query 64336 AATTC 64340 ||||| Sbjct 73467 AATTC 73463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499630216617400