Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20J132_20[genbank_20GCA_5F001263195.1_202015-08- 10] 2,335 sequences; 67,296,805 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq666 113 4e-20 seq641 100 3e-16 >seq666 Length=522490 Score = 113 bits (124), Expect = 4e-20 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 45135 AGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCA 45192 ||||| || || |||||||| || ||||| ||||| || || | || ||| || | Sbjct 282820 AGATGAAGGGTAGATTCCTTCTGAATATTGTAATCA--GAAAGTGTACGACCATCTTCGA 282877 Query 45193 ATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAA 45252 |||||||| ||| | ||||| ||||||||||| || ||||| ||||| |||||||| | Sbjct 282878 GCTGTTTTCCGGCGAAGATCAAACGTTGCTGGTCAGGGGGAATACCTTCCTTATCTTGGA 282937 Query 45253 TTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGC 45312 | || ||||| || | ||| ||||| ||||| || || || || | || || | Sbjct 282938 TCTTGGTTTTGACATTGTCGATGGTATCGGAGGACTCCACCTCAAGGGTGATGGTCTTCC 282997 Query 45313 CGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || | || ||||||||||| ||||| Sbjct 282998 CAGTCAAGGTCTTTACAAAAATCTGCAT 283025 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 45135 AGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAAT 45194 || || || || |||||||| || ||||| || || || || | ||| || | | Sbjct 282542 AGGTGGAGGGTGGATTCCTTCTGAATATTGTAGTCCGAGAGAGTGCGACCATCTTCAAGT 282601 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || ||| | ||||| |||||||| || || || || ||||| || || ||||| Sbjct 282602 TGCTTGCCGGCGAAGATCAAGCGTTGCTGATCGGGAGGTATACCTTCCTTGTCCTGAATC 282661 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || |||| || | || | |||||||| || || || || ||||| | || || || Sbjct 282662 TTGGCCTTGA-CGTTATCAATAGTGTCGGACGATTCAACCTCAAGAGTGATGGTCTTTCC 282720 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || |||||||||||||| Sbjct 282721 TGTCAGAGTCTTGACAAAAATTTGCAT 282747 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | || || ||||| ||||| || || || || || || ||||| Sbjct 282238 ATACCACCGCGGAGACGCAGAACAAGATGGAGCGTCGACTCTTTCTGAATGTTGTAATCA 282297 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || || | ||||| || || | ||||| ||||||||||| || Sbjct 282298 GAAAGAGTGCGGCCGTCCTCAAGCTGTTTCCCGGCAAAGATCAAGCGTTGCTGGTCGGGG 282357 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || |||||||| || || |||||||| |||| || | || | ||||| || || || Sbjct 282358 GGGATGCCTTCCTTGTCCTGAATTTTCGCCTTGA-CGTTATCAATTGTGTCCGACGATTC 282416 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| |||| || || || || | || || || ||||||||||| Sbjct 282417 AACCTCGAGCGTAATGGTCTTCCCCGTCAACGTCTTGACGAAAATTTGCAT 282467 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 45135 AGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAAT 45194 |||||||| || ||||| || || ||||| ||| | || | || || | | Sbjct 282034 AGATGCAGGGTGCTCTCCTTCTGTATGTTATAGTCGGAAAGCGTCCTCCCGTCTTCGAGT 282093 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || || | || | ||||||||||| |||||||| ||||| || || ||||| Sbjct 282094 TGCTTGCCCGCAAAGATTAGGCGTTGCTGGTCAGGCGGAATACCTTCCTTGTCCTGAATC 282153 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || ||| | || | || | ||||| || ||||| ||||| | |||| ||| || || Sbjct 282154 TTCGCTTTCA-CGTTGTCAATCGTGTCCGACGACTCCACTTCCAACGTAATCGTCTTTCC 282212 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || |||||||| ||||| Sbjct 282213 GGTGAGCGTCTTCACAAAAATCTGCAT 282239 >seq641 Length=242067 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 45135 AGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAAT 45194 |||||||| || |||||||| || |||||||||||| || |||| ||| || | | Sbjct 74294 AGATGCAGTGTCGATTCCTTCTGTATATTATAATCGGAGAGGGTTCGCCCATCCTCAAGT 74235 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || ||| | || | ||||| || || || ||||| || || || ||||||| | Sbjct 74234 TGCTTGCCAGCGAAGATAAGACGTTGTTGATCAGGAGGAATACCCTCCTTGTCTTGAA-T 74176 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || | | | || | || | ||||| ||||| || ||||| || || | || ||||| Sbjct 74175 CTTCGCCTTAACGTTATCGATCGTGTCAGAAGATTCAACTTCAAGGGTTATAGTCTTGCC 74116 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | ||| || ||||| || ||||| Sbjct 74115 CGTCAAAGTCTTGACAAAGATCTGCAT 74089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451990007156600