Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20J132_20[genbank_20GCA_5F001263195.1_202015-08- 10] 2,335 sequences; 67,296,805 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq666 114 8e-21 seq641 98.7 6e-16 >seq666 Length=522490 Score = 114 bits (126), Expect = 8e-21 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||| ||||||||||| ||||| | | | || || || || || || Sbjct 282043 GTGCTCTCCTTCTGTATGTTATAGTCGGAAAGCGTCCTCCCGTCTTCGAGTTGCTTGCCC 282102 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| ||||| ||||||||||| |||| | || |||||||| ||||||| ||| Sbjct 282103 GCAAAGATTAGGCGTTGCTGGTCAGGCGGAATACCTTCCTTGTCCTGAATCTTCGCTTTC 282162 Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 ||| | |||| || | ||| || || | || || || ||||| ||||| ||| Sbjct 282163 ACGTTGTCAATCGTGTCCGACGACTCCACTTCCAACGTAATCGTCTTTCCGGTGAGCGTC 282222 Query 34965 TTCACAAAGATCTGCATA 34982 |||||||| ||||||||| Sbjct 282223 TTCACAAAAATCTGCATA 282240 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||| || || ||||| | || | || || |||||||| |||||||| Sbjct 282277 TCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCAAGCTGTTTCCCGGCAAAG 282336 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||||||||||| | || | || |||||||| ||| ||| ||||| Sbjct 282337 ATCAAGCGTTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGAATTTTCGCCTTGAC---- 282392 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | |||| || | ||| | ||||| |||| || ||||| || ||||| | ||||| Sbjct 282393 GTTATCAATTGTGTCCGACGATTCAACCTCGAGCGTAATGGTCTTCCCCGTCAACGTCTT 282452 Query 34967 CACAAAGATCTGCATA 34982 || || || |||||| Sbjct 282453 GACGAAAATTTGCATA 282468 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| |||||||| || || || ||||| | || |||| || |||||||||||||| || Sbjct 282834 TTCCTTCTGAATATTGTAATCAGAAAGTGTACGACCATCTTCGAGCTGTTTTCCGGCGAA 282893 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | ||||||||||| | || | || ||||| || ||||| |||||| | Sbjct 282894 GATCAAACGTTGCTGGTCAGGGGGAATACCTTCCTTATCTTGGATCTTGGTTTTGAC--A 282951 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | ||||| || || ||| || || | ||| ||||| || || || | |||| Sbjct 282952 T--TGTCGATGGTATCGGAGGACTCCACCTCAAGGGTGATGGTCTTCCCAGTCAAGGTCT 283009 Query 34966 TCACAAAGATCTGCAT 34981 | ||||| |||||||| Sbjct 283010 TTACAAAAATCTGCAT 283025 >seq641 Length=242067 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| || ||||| || || ||| |||| |||| || || || || || || || Sbjct 74280 TTCCTTCTGTATATTATAATCGGAGAGGGTTCGCCCATCCTCAAGTTGCTTGCCAGCGAA 74221 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || ||||| || || | || | ||||||||||| ||||||| || ||| Sbjct 74220 GATAAGACGTTGTTGATCAGGAGGAATACCCTCCTTGTCTTGAATCTTCGCCTTAACGTT 74161 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | |||| ||| | ||||| || | |||||| || || ||||| | |||||| || Sbjct 74160 ATCGATCGTGTCAGAAGATTCAACTTCAAGGGTTATAGTCTTGCCCGTCAAAGTCTTGAC 74101 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 74100 AAAGATCTGCAT 74089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324624361637880