Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20J132_20[genbank_20GCA_5F001263195.1_202015-08- 10] 2,335 sequences; 67,296,805 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq120 107 3e-18 >seq120 Length=370717 Score = 107 bits (118), Expect = 3e-18 Identities = 357/553 (65%), Gaps = 9/553 (2%) Strand=Plus/Plus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || ||||| || ||||| | ||| ||||| | | || | ||||| || || || Sbjct 287551 CATGCAAAGTCGGTGTGCATACCCTCATCACGGCTGATAAGCTCGTTTGAGAAAGTCAAG 287610 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 |||||||| | ||| | ||| |||||||| || || ||||| || | || ||||| Sbjct 287611 CCGGGCATGAGACCACGTTTCTTTAGCCAGAAGATTGATGCAAAGGAGCCTGAGAAGAAG 287670 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGT 18337 || || || || ||| || || | ||| | ||| || ||| | | || ||| |||| Sbjct 287671 ATGCCTTCCACAGCCGCAAATGCAACTAACCGTTCGGCGAAAGTAGAGTTCTTG-TCAGA 287729 Query 18338 -ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396 ||||| || | |||||||| | | ||||| || || | || || |||| Sbjct 287730 GATCCACTTCAGAGCCCATTCAGCCTTCCGTTTAATACAGGGAATGGTTTCGATGGCATC 287789 Query 18397 AAACAAATCATCTTTTTCT--TTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 ||| | | || || |||| || || || |||||||| || | | |||||| Sbjct 287790 AAAGAGGTACTCGCGCTCAGCTTGG--TCCTTGATGTAAGTGTCTATAAGGAGAGAATAT 287847 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGA 18514 |||| ||||| ||| ||||||| |||||||| | ||| || | | ||| || | Sbjct 287848 GTTTCGGAATGAATGTTTTCCATCATGATCTGAAAGCCATAGAAACAGCGAGCTTCAGCT 287907 Query 18515 TATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGAT 18574 || | || | | || | || || | || || || || || || || | || Sbjct 287908 GCCTGGACTTCATTGGAGAAGCGCTCGACAAGGTTTTCGTTGACAATGCCATCGGAAGCA 287967 Query 18575 GCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGA---TTGTTC 18631 || ||||| |||||||| | || || || ||||| || ||||| | ||| Sbjct 287968 GCAAAAAAAGCCAAAACGTGCGAGATAAAGTGGCGCTCATTGTCATTGAGGCGTTCATTC 288027 Query 18632 CATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCC 18691 || || | | || || || ||||| | || || | ||||| || |||| ||| ||| Sbjct 288028 CAATCGTAAAGGTCCTTGGAAAGATCCATCTCCTCAGCCGTCCAGAAGGATGCTTCTGCC 288087 Query 18692 TGTTTGTACATTT 18704 | ||||||||||| Sbjct 288088 TTTTTGTACATTT 288100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731850638486000