Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20J132_20[genbank_20GCA_5F001263195.1_202015-08- 10] 2,335 sequences; 67,296,805 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq641 178 3e-39 seq666 150 4e-31 >seq641 Length=242067 Score = 178 bits (196), Expect = 3e-39 Identities = 161/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 ||||| || ||||| ||||||||||||||||| || || ||| || || || ||||| Sbjct 74291 TGCAGTGTCGATTCCTTCTGTATATTATAATCGGAGAGGGTTCGCCCATCCTCAAGTTGC 74232 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||| ||||| || | ||||||||| ||||| || || ||||| ||||||||||| Sbjct 74231 TTGCCAGCGAAGATAAGACGTTGTTGATCAGGAGGAATACCCTCCTTGTCTTGAATCTTC 74172 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || || || ||||| ||| || ||| ||||| | ||||| |||||||| ||| Sbjct 74171 GCCTTAACGTTATCGATCGTGTCAGAAGATTCAACTTCAAGGGTTATAGTCTTGCCCGTC 74112 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || ||||| ||||| |||||||| Sbjct 74111 AAAGTCTTGACAAAGATCTGCAT 74089 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || ||||||||||| || || || || || ||| | | || || || |||||| Sbjct 74063 TGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGTCCATCCTCGAGTTGT 74004 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || ||||| || | ||||||||| ||||| || || || ||||| || || || Sbjct 74003 TTGCCTGCGAAGATGAGACGTTGTTGATCAGGAGGGATACCCTCTTTATCCTGGATTTTA 73944 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || || || || ||||| | || || || | || || |||||||| ||| Sbjct 73943 GCCTTGACGTTGTCGATGGTATCTGATGACTCGACCTCAAGGGTGATAGTCTTGCCAGTC 73884 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| Sbjct 73883 AGAGTCTTGACGAAGATCTGCAT 73861 Score = 96.9 bits (106), Expect = 7e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || || ||||||| || |||||||| |||||||| || || ||||||| Sbjct 73588 TACCACCACGCAGGCGGAGAACTAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAG 73529 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | || || ||||| || || || ||||||||||| || | |||||| || |||| Sbjct 73528 AGAGCGTCCTCCCATCTTCGAGCTGCTTCCCAGCAAAGATAAGGCGTTGTTGGTCGGGAG 73469 Query 82702 GTATTC 82707 | |||| Sbjct 73468 GAATTC 73463 Score = 93.3 bits (102), Expect = 8e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | || || || ||||| ||||||||||||||||||| Sbjct 73861 TACCACCGCGTAGACGAAGGACGAGATGGAGGGTCGATTCCTTCTGTATATTATAATCAG 73802 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||| |||||| || || ||||||||||| ||||| || | ||||| || |||| Sbjct 73801 AAAGTGTTCGACCGTCCTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGTTGGTCAGGAG 73742 Query 82702 GTAT 82705 | || Sbjct 73741 GGAT 73738 >seq666 Length=522490 Score = 150 bits (166), Expect = 4e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 || |||||||| ||||| || || || | || |||||||| ||||| || || |||||| Sbjct 282049 TCCTTCTGTATGTTATAGTCGGAAAGCGTCCTCCCGTCTTCGAGTTGCTTGCCCGCAAAG 282108 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 ||||| | ||| || || || || || |||||||| || |||||||| ||||| || || Sbjct 282109 ATTAGGCGTTGCTGGTCAGGCGGAATACCTTCCTTGTCCTGAATCTTCGCTTTCACGTTG 282168 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799 |||||||| || | || |||||||| || |||||||| || || | |||||| ||| Sbjct 282169 TCAATCGTGTCCGACGACTCCACTTCCAACGTAATCGTCTTTCCGGTGAGCGTCTTCACA 282228 Query 82800 AATATCTGCAT 82810 || |||||||| Sbjct 282229 AAAATCTGCAT 282239 Score = 147 bits (162), Expect = 4e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || |||||||| ||||| ||||| |||||||| || | | ||| ||||| || ||| Sbjct 282823 TGAAGGGTAGATTCCTTCTGAATATTGTAATCAGAAAGTGTACGACCATCTTCGAGCTGT 282882 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 ||||| || ||||| | | ||| || || || || || |||||||||||||| ||||| Sbjct 282883 TTTCCGGCGAAGATCAAACGTTGCTGGTCAGGGGGAATACCTTCCTTATCTTGGATCTTG 282942 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | ||| ||||| || || ||||| | || || || | || || ||||| || ||| Sbjct 282943 GTTTTGACATTGTCGATGGTATCGGAGGACTCCACCTCAAGGGTGATGGTCTTCCCAGTC 283002 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 || ||||||||||| ||||||||| Sbjct 283003 AAGGTCTTTACAAAAATCTGCATT 283026 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||||||| | || || || || |||||||| || || ||||||| Sbjct 282239 TACCACCGCGGAGACGCAGAACAAGATGGAGCGTCGACTCTTTCTGAATGTTGTAATCAG 282298 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||||| || || ||||| || |||||||| | | ||| || || || | Sbjct 282299 AAAGAGTGCGGCCGTCCTCAAGCTGTTTCCCGGCAAAGATCAAGCGTTGCTGGTCGGGGG 282358 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || ||||| || || || || || ||||| || || | ||| | Sbjct 282359 GGATGCCTTCCTTGTCCTGAATTTTCGCCTTGACGTTATCAATTGTGTCCGACGATTCAA 282418 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || ||||| || ||||||||||| || || || ||||| Sbjct 282419 CCTCGAGCGTAATGGTCTTCCCCGTCAACGTCTTGACGAAAATTTGCAT 282467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981797826491565