Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20J132_20[genbank_20GCA_5F001263195.1_202015-08- 10] 2,335 sequences; 67,296,805 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq120 170 3e-36 >seq120 Length=370717 Score = 170 bits (188), Expect = 3e-36 Identities = 378/547 (69%), Gaps = 25/547 (5%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||||||| |||||||| |||||||| || || ||||| ||||| || |||||| | || | Sbjct 288108 GATATGGCAAATGTAC-AAAAAGGCAGAAGCATCCTTCTGGACGGCTGAGGAGATGGATC 288050 Query 1455835 TCGGCGCCGACACGGTCCACTGGG-TGT-CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 | | ||| | | ||| || ||| | | ||| | |||||||| || ||| Sbjct 288049 TTTCCAAGGACCTTTACGATTGGAATGAACGCCTCAATGACAATGAGCGCCACTTTATCT 287990 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||| | || |||||| || || ||||||||| || ||| ||||| | || Sbjct 287989 CGCACGTTTTGGCTTTTTTT-GCTGCTTCCGATGGCATTGTCAACGAAAACCTTGTCGAG 287931 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| || || ||||| | || || || | || || || || |||||| Sbjct 287930 CGCTTCTCCAATGAAGTCCAGGCAGCTGAAGCTCGCTGTTTCTATGGCTTTCAGATCATG 287871 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || |||||||| || || ||||| || || ||||| || ||||| ||| ||||||||| Sbjct 287870 ATGGAAAACATTCATTCCGAAACATATTCTCTCCTTATAGACACTTACATCAAGGACCAA 287811 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAA---AAG 1456128 | ||| || |||||||| |||||||| || | || | || | ||| ||| Sbjct 287810 GCTGAGCGCGAGTACCTCTTTGATGCCATCGAAACCATTCCCT--GT-ATTAAACGGAAG 287754 Query 1456129 GCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAGCGGC 1456185 || || ||||| ||||||||||| ||||| | ||| || || ||||| ||| Sbjct 287753 GCTGAATGGGCTCTGAAGTGGATCTCTGACAAGAA----CTCTACT-TTCGCCGAACGGT 287699 Query 1456186 TCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCA-TCTTT 1456243 | || | ||||| || || || |||||||| ||||| ||| || ||| || |||| Sbjct 287698 TAGTTGCATTTGCGGCTGTGGAAGGCATCTTCTTCTCAGGCTCCTT-TGCATCAATCTTC 287640 Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGC-AACGAATTTATCAGTC 1456302 ||||| ||||| || || ||||||||||| ||| |||| | ||||| ||||||| | Sbjct 287639 TGGCTAAAGAAACGTGGTCTCATGCCCGG-CTT-GACTTTCTCAAACGAGCTTATCAGCC 287582 Query 1456303 GCGACGA 1456309 | || || Sbjct 287581 GTGATGA 287575 Score = 132 bits (146), Expect = 7e-25 Identities = 359/534 (67%), Gaps = 28/534 (5%) Strand=Plus/Plus Query 1455792 AAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGA---CACG 1455848 |||||||| |||| || ||||||||||| ||||| | || ||| || ||| || | Sbjct 289230 AAAAAGGCACAGGCGTCATTTTGGACCGCAGAGGAAATAGATCTCTGCCACGATCTCATG 289289 Query 1455849 GTCCACTGGGTGTC----GCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGC 1455904 | | || || ||| | | | ||| || |||||||| ||||||||||| Sbjct 289290 GA----TTGGAATCATAAGCTCAACTCCAGCGAACGGTATTTCATCTCTCACGTCCTCGC 289345 Query 1455905 CTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAG 1455964 || ||| || || ||| ||||| ||| |||||||| | || || | | Sbjct 289346 ATTCTTT-GCTGCTTCCGACGGCATTGTGAATGAGAACCTCCTTGAACGATTCTCCAGTG 289404 Query 1455965 AGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCC 1456024 | | || | | || ||||| | || ||||| ||||| || || ||||| | | Sbjct 289405 AAATTCAGGTAGCTGAAGCACGGTGCTTCTACGGCTTCCAAATAATGATGGAAAATGTTC 289464 Query 1456025 ACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACC 1456084 |||| ||||| ||||| || || |||||||||||| ||||||| || | |||| | Sbjct 289465 ACTCGGAAACTTACTCTCTACTTATCGACACCTACATCAAGGATCCAG--AAGAACGGAA 289522 Query 1456085 ACCTCT-TTCG-CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGAT 1456142 || ||| |||| ||||||||| || | | | || | | || || |||||||| | Sbjct 289523 ACATCTATTCGACGCCATCGAAACCATCTCATGTGTCAAGCGTAAAGCTGACTGGGCTCT 289582 Query 1456143 GAAGTGG--ATCA-ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCC 1456199 | ||| |||| || | || || || |||||| || || || || | |||||| Sbjct 289583 TAGATGGATATCAGACCAACAG----TCCAC-CTTTGCGGAACGACTTGTTGCTTTTGCC 289637 Query 1456200 GC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGC-GCCATCTTTTGGCTCAAGAAGCG 1456257 || || || || || |||||||| || || ||| || || |||||| |||||||||| Sbjct 289638 GCTGTAGAAGGAATATTTTTCTCTGGGTCCTT-TGCTGCTATTTTTTGGATCAAGAAGCG 289696 Query 1456258 CGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 || | ||||| |||| || || ||| ||| | |||||||||||||||| Sbjct 289697 TGGTTTGATGCCTGGTC-TCACTTTCTCCAATGAACTCATCAGTCGCGACGAAG 289749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177585984958270