Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20J132_20[genbank_20GCA_5F001263195.1_202015-08- 10] 2,335 sequences; 67,296,805 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq120 199 3e-46 >seq120 Length=370717 Score = 199 bits (220), Expect = 3e-46 Identities = 387/569 (68%), Gaps = 28/569 (5%) Strand=Plus/Minus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 |||||||||||||||||||| ||| | || || || ||||| || || || | ||| | Sbjct 288107 ATATGGCAAATGTACAAAAAGGCAGAAGCATCCTTCTGGACGGCTGAGGAGATGGATCTT 288048 Query 43790 ACTAAAGACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAA-------CATTTTAT 43842 | || ||| | |||||| || || || ||| | || || ||||| Sbjct 288047 TCCAAGGACCTTTACGATTGGAATG----AACGCCTCAATGACAATGAGCGCCACTTTAT 287992 Query 43843 ATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAG 43902 || |||||||| ||||||||||| ||| || || ||||| ||||| | || Sbjct 287991 CTCGCACGTTTTGGCTTTTTTTGCTGCTTCCGATGGCATTGTCAACGAAAACCTTGTCGA 287932 Query 43903 TCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 || || | | ||||| || | | ||||| || ||||| ||||| ||||| || Sbjct 287931 GCGCTTCTCCAATGAAGTCCAGGCAGCTGAAGCTCGCTGTTTCTATGGCTTTCAGATCAT 287872 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA--- 44019 || ||||| |||||||| |||| || ||| || ||||| || |||||||| || Sbjct 287871 GATGGAAAACATTCATTCCGAAACATATTCTCTCCTTATAGACACTTACATCAAGGACCA 287812 Query 44020 ---TGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAAC-AGTACCTGCGATTAAAC 44075 || || |||| | | | ||| |||| || ||||| | | |||| ||||||| Sbjct 287811 AGCTGAGCGCGAGTACC------TCTTTGATGCCATCGAAACCATTCCCTGT-ATTAAAC 287759 Query 44076 ATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT---TTTGGAGAACGAC 44132 || || || ||||| || || ||||| | || | ||| || | ||||| Sbjct 287758 GGAAGGCTGAATGGGCTCTGAAGTGGATCTCTGACAAGAACTCTACTTTCGCCGAACGGT 287699 Query 44133 TTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTT 44192 | || || ||||| | |||||||||||| ||||| ||||| || ||||| | || || | Sbjct 287698 TAGTTGCATTTGCGGCTGTGGAAGGCATCTTCTTCTCAGGCTCCTTTGCATCAATCTTCT 287639 Query 44193 GGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTG 44252 || |||||||||| ||| | ||||| || ||||| || ||||| ||| | || || |||| Sbjct 287638 GGCTAAAGAAACGTGGTCTCATGCCCGGCTTGACTTTCTCAAACGAGCTTATCAGCCGTG 287579 Query 44253 ATGAAGGCTTACATTGCGATTTTGCTTGC 44281 |||| || | || ||| ||||| ||| Sbjct 287578 ATGAGGGTATGCACACCGACTTTGCATGC 287550 Score = 172 bits (190), Expect = 4e-38 Identities = 383/566 (68%), Gaps = 24/566 (4%) Strand=Plus/Plus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 |||||| | | || ||||| |||||||||||||||||||| ||||| ||| | ||| | Sbjct 289215 ATATGGAATTTTTATAAAAAGGCACAGGCGTCATTTTGGACCGCAGAGGAAATAGATCTC 289274 Query 43790 ACTAAAGACTTAGCACATTGGATTGCATTAA-AACCACAA-------GAAAAACATTTTA 43841 | || | ||| |||||| | | | || | ||| ||| |||| | Sbjct 289275 TGCCACGATCT----CAT-GGATTGGAATCATAAGCTCAACTCCAGCGAACGGTATTTCA 289329 Query 43842 TATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTA 43901 | ||| || | || || |||||||| |||||| || || ||||| || | || Sbjct 289330 TCTCTCACGTCCTCGCATTCTTTGCTGCTTCCGACGGCATTGTGAATGAGAACCTCCTTG 289389 Query 43902 GTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTG 43961 || || | ||| |||| || | |||||||| || || || || || ||||| Sbjct 289390 AACGATTCTCCAGTGAAATTCAGGTAGCTGAAGCACGGTGCTTCTACGGCTTCCAAATAA 289449 Query 43962 CCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATG 44021 || |||||| |||| ||||||| ||| ||| || || || || |||||||| ||| Sbjct 289450 TGATGGAAAATGTTCACTCGGAAACTTACTCTCTACTTATCGACACCTACATCAAGGATC 289509 Query 44022 GGCACGA---GAAGCATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACAT 44077 | || ||| |||| ||| | || || ||||| | | || | | || | | Sbjct 289510 CAGAAGAACGGAAACATCTATTCG---ACGCCATCGAAACCATCTCATGTG-TCAAGCGT 289565 Query 44078 AAAGCAGACTGGGCCCTTAAATGGATAA-ATTCAAATGATTCT--TTTGGAGAACGACTT 44134 ||||| |||||||| |||| ||||||| | | || | | |||| ||||||||| Sbjct 289566 AAAGCTGACTGGGCTCTTAGATGGATATCAGACCAACAGTCCACCTTTGCGGAACGACTT 289625 Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || || ||||| | ||| ||||| || || || || || || ||||| || || |||||| Sbjct 289626 GTTGCTTTTGCCGCTGTAGAAGGAATATTTTTCTCTGGGTCCTTTGCTGCTATTTTTTGG 289685 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 | ||||| || |||||||||||||| | || || || ||||| | || ||||| || Sbjct 289686 ATCAAGAAGCGTGGTTTGATGCCTGGTCTCACTTTCTCCAATGAACTCATCAGTCGCGAC 289745 Query 44255 GAAGGCTTACATTGCGATTTTGCTTG 44280 |||||| | || |||||||| || Sbjct 289746 GAAGGCCTTCACACGGATTTTGCATG 289771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397444689271675