Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20J132_20[genbank_20GCA_5F001263195.1_202015-08- 10] 2,335 sequences; 67,296,805 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq120 91.5 2e-13 seq654 86.0 7e-12 >seq120 Length=370717 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 |||||||| ||||||||||| ||||| || | || |||||||| || || ||||| Sbjct 287681 GTGGAAGGCATCTTCTTCTCAGGCTCCTTTGCATCAATCTTCTGGCTAAAGAAACGTGGT 287622 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112 |||||||| ||| ||| |||||| |||||||| || ||| || ||||| Sbjct 287621 CTCATGCCCGGCTTGACTTTCTCAAACGAGCTTATCAGCCGTGATGAGGG 287572 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/204 (70%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 60226 CAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTC 60285 |||| || || || |||||||||||| ||| || | | |||| ||||||||| Sbjct 287402 CAGATGCTCTCCCTGTCAAACTCATAGGCATGAACTCGGACCTAATGCGCCAGTACATTG 287343 Query 60286 AGTTTGTCGCGGACCGC---CTCATGGCCCAGTTTGGAGAAGGACCAATT-TACGGCGTG 60341 ||||||| || || || ||| |||||| | | || ||| | | ||| | | Sbjct 287342 AGTTTGTGGCTGATCGTTTACTCGTGGCCC----TCGGTAACGACAAGGTCTACAACAAG 287287 Query 60342 AATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAG 60401 | || || || |||| ||||| | || || || |||| ||||| |||||||||||| Sbjct 287286 ACCAATCCATTTGACTTCATGGACATGATTTCATTACAAGGCAAGACGAACTTCTTTGAG 287227 Query 60402 AAGCGGGTCGGGGATTATTCAAAG 60425 |||||||| |||||| |||||| Sbjct 287226 AAGCGGGTTTCGGATTACTCAAAG 287203 >seq654 Length=437428 Score = 86.0 bits (94), Expect = 7e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 78199 TAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGACAGCTTG 78258 |||||||| ||||||||||||||||||||||| || || | |||||| || | ||||| | Sbjct 46514 TAGTACATTCCCGTCTTGAGACCCTTCTTCCAGCCATAGAAGTGCATGCTTGTCAGCTGG 46573 Query 78259 GCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATGTACGCACCG 78318 | ||| ||||| | || | || ||| | ||| |||| ||| | || || Sbjct 46574 CCGAGAGTCGGGGCTTGCAAGTGGACGTTCAAACTTTGGCTCTGGCAGATAAAGGCCCCA 46633 Query 78319 CGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTCCGGTAAATG 78378 || || || || | |||||| || ||| || |||||||||| ||| ||| || Sbjct 46634 CGATCAGCAGCGAGGTCGATAACTTTCTTCTGGCTGATCTCCCAGACAGTCTTGTAGATT 46693 Query 78379 GCCTT 78383 ||||| Sbjct 46694 GCCTT 46698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548508789932400