Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20J132_20[genbank_20GCA_5F001263195.1_202015-08- 10] 2,335 sequences; 67,296,805 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq666 136 2e-27 seq641 98.7 6e-16 >seq666 Length=522490 Score = 136 bits (150), Expect = 2e-27 Identities = 157/209 (75%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 34499 CCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAA 34558 ||| ||| || ||||||||||| || |||||||| || ||||| || | | ||||||| | Sbjct 282032 CCAGATGCAGGGTGCTCTCCTTCTGTATGTTATAGTCGGAAAGCGTCCTCCCGTCTTCGA 282091 Query 34559 GTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGA 34618 |||| || || ||||| |||| || || ||||| ||||| | || |||||||| ||| Sbjct 282092 GTTGCTTGCCCGCAAAGATTAGGCGTTGCTGGTCAGGCGGAATACCTTCCTTGTC-CTGA 282150 Query 34619 TCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTA 34677 || | ||| ||| | ||| ||||| ||||||||||| || ||||| || Sbjct 282151 ATCTTCGCTTTCACGTTGTCAATCGTGTCCGACGACTCCACTTCCAACGTAATCGTCTTT 282210 Query 34678 CCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | ||| ||||||||||||||||| Sbjct 282211 CCGGTGAGCGTCTTCACAAAAATCTGCAT 282239 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| ||||| || ||||| |||||||| || | ||||| || ||||| ||||| || Sbjct 282835 TCCTTCTGAATATTGTAATCAGAAAGTGTACGACCATCTTCGAGCTGTTTTCCGGCGAAG 282894 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || ||||| || ||||| || || | || ||||| ||| |||||| ||||| || | Sbjct 282895 ATCAAACGTTGCTGGTCAGGGGGAATACCTTCCTTATCTTGGATCTTG-GTTTTGACATT 282953 Query 34636 AAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 || || || | |||||| || | ||| || || || || || || || || || Sbjct 282954 GTCGATGGTATCGGAGGACTCCACCTCAAGGGTGATGGTCTTCCCAGTCAAGGTCTTTAC 283013 Query 34695 AAAAATCTGCAT 34706 |||||||||||| Sbjct 283014 AAAAATCTGCAT 283025 >seq641 Length=242067 Score = 98.7 bits (108), Expect = 6e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| || || |||||||| || || |||||| | || |||||||| || || || || Sbjct 74279 TCCTTCTGTATATTATAATCGGAGAGGGTTCGCCCATCCTCAAGTTGCTTGCCAGCGAAG 74220 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | ||| ||||| || || || | |||||||||||| ||| || | |||||| | Sbjct 74219 ATAAGACGTTGTTGATCAGGAGGAATACCCTCCTTGTCT-TGAATCTTCGCCTTAACGTT 74161 Query 34636 A-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | || ||||| || ||||| | |||||| || || || || || || || || Sbjct 74160 ATCGATCGTGTCAGAAGATTCAACTTCAAGGGTTATAGTCTTGCCCGTCAAAGTCTTGAC 74101 Query 34695 AAAAATCTGCATG 34707 ||| ||||||||| Sbjct 74100 AAAGATCTGCATG 74088 Score = 82.4 bits (90), Expect = 5e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | |||||| || ||||| || || |||||||| ||||||||||| Sbjct 73850 AGACGAAGGACGAGATGGAGGGTCGATTCCTTCTGTATATTATAATCAGAAAGTGTTCGA 73791 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 |||| ||||| ||||| || || || || | |||||||||||| || || Sbjct 73790 CCGTCCTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGTTGGTCAGGAGG 73741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314720643484055