Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20J132_20[genbank_20GCA_5F001263195.1_202015-08- 10] 2,335 sequences; 67,296,805 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq666 109 5e-19 >seq666 Length=522490 Score = 109 bits (120), Expect = 5e-19 Identities = 151/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 39077 CCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAA 39136 ||| ||| || |||||||| || ||||| ||||| |||| ||| || | |||| || | Sbjct 282032 CCAGATGCAGGGTGCTCTCCTTCTGTATGTTATAGTCGGAAAGCGTCCTCCCGTCTTCGA 282091 Query 39137 GCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGA 39196 | || ||||||||||| || || || |||||||| | || | | || |||||| | Sbjct 282092 GTTGCTTGCCCGCAAAGATTAGGCGTTGCTGGTCAGGCGGAATACCTTCCTTGTCCTGAA 282151 Query 39197 TTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 | ||| ||| | ||| | | | ||| || ||||||||| |||| ||| || | ||| Sbjct 282152 TCTTCGCTTTCA-CGTTGTCAATCGTGTCCGACGACTCCACTTCCAACGTAATCGTCTTT 282210 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || ||||| || ||||| || ||||| Sbjct 282211 CCGGTGAGCGTCTTCACAAAAATCTGCAT 282239 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| ||||| |||||| || || || ||||| | ||| || || |||| |||||||| Sbjct 282264 ATGGAGCGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCAAGCTG 282323 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||| || ||||| || | || |||||||||| ||| | || || |||||| ||||| Sbjct 282324 TTTCCCGGCAAAGATCAAGCGTTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGAATTTT 282383 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 | |||| | | | || || ||| || || || | ||| || | || ||||| Sbjct 282384 CGCCTTGACGTTATCAATTGTGTCCGACGATTCAACCTCGAGCGTAATGGTCTTCCCCGT 282443 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || ||| || || || |||||||| Sbjct 282444 CAACGTCTTGACGAAAATTTGCAT 282467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429533376071855