Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20J132_20[genbank_20GCA_5F001263195.1_202015-08- 10] 2,335 sequences; 67,296,805 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq120 201 2e-46 >seq120 Length=370717 Score = 201 bits (222), Expect = 2e-46 Identities = 384/561 (68%), Gaps = 6/561 (1%) Strand=Plus/Minus Query 48137 TAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 48196 || |||||||||||| ||||| ||||| || | ||| || | ||| || || || || Sbjct 289775 TAGACATGCAAAATCCGTGTGAAGGCCTTCGTCGCGACTGATGAGTTCATTGGAGAAAGT 289716 Query 48197 GAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAA 48256 |||||| ||||| | ||||| || |||| |||||| || || || || || ||||| || Sbjct 289715 GAGACCAGGCATCAAACCACGCTTCTTGATCCAAAAAATAGCAGCAAAGGACCCAGAGAA 289656 Query 48257 GAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGG-CT-TCGTTG 48314 ||||| |||||||| || ||||| || ||||| || | | ||| || | | | Sbjct 289655 AAATATTCCTTCTACAGCGGCAAAAGCAACAAGTCGTTCCGCAAAGGTGGACTGTTGGTC 289596 Query 48315 TG-TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 || |||||| | | ||||| ||||| || ||| ||||| | || ||||| || || Sbjct 289595 TGATATCCATCTAAGAGCCCAGTCAGCTTTACGCTTGACACATGAGATGGTTTCGATGGC 289536 Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 | || ||| || ||| | ||| || | ||| || || || | ||| || Sbjct 289535 GTCGAATAGATGTTTCCGTTCTTCTGGATCCTTGATGTAGGTGTCGATAAGTAGAGAGTA 289476 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 |||| ||||||| |||||| || || || || ||||| || || | ||||| | Sbjct 289475 AGTTTCCGAGTGAACATTTTCCATCATTATTTGGAAGCCGTAGAAGCACCGTGCTTCAGC 289416 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 | ||| | || | | ||||||||| | |||||||| || || || || ||| Sbjct 289415 TACCTGAATTTCACTGGAGAATCGTTCAAGGAGGTTCTCATTCACAATGCCGTCGGAAGC 289356 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTT---ATT 48610 |||||| ||||| | || || || ||||| |||| |||| | || || ||| Sbjct 289355 AGCAAAGAATGCGAGGACGTGAGAGATGAAATACCGTTCGCTGGAGTTGAGCTTATGATT 289296 Query 48611 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 ||| || ||| ||| | | | ||||| ||| || || ||||||||||| |||| ||| Sbjct 289295 CCAATCCATGAGATCGTGGCAGAGATCTATTTCCTCTGCGGTCCAAAATGACGCCTGTGC 289236 Query 48671 TTTTTTATACATATTCCATAT 48691 |||||||| | ||||||||| Sbjct 289235 CTTTTTATAAAAATTCCATAT 289215 Score = 165 bits (182), Expect = 1e-35 Identities = 374/559 (67%), Gaps = 10/559 (2%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 |||||||| || || | ||| ||||| | || || | ||||| || || || | Sbjct 287551 CATGCAAAGTCGGTGTGCATACCCTCATCACGGCTGATAAGCTCGTTTGAGAAAGTCAAG 287610 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 |||||||| || |||||||| || ||||| || |||| || || || || || ||||| Sbjct 287611 CCGGGCATGAGACCACGTTTCTTTAGCCAGAAGATTGATGCAAAGGAGCCTGAGAAGAAG 287670 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT--- 48317 |||||||| || ||||||||||| | | || || || | | | |||| Sbjct 287671 ATGCCTTCCACAGCCGCAAATGCAACTAACCGTTCGGCGAAAGTAGAGTTCTTGTCAGAG 287730 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 |||||| | ||||| ||||||||| || | ||| || || ||||| || |||| | Sbjct 287731 ATCCACTTCAGAGCCCATTCAGCCTTCCGTTTAATACAGGGAATGGTTTCGATGGCATCA 287790 Query 48378 AAGAGAAAGtttttttCATTGCTA--TCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435 ||||| | | ||| ||| || || | |||||| ||||| | ||| ||| Sbjct 287791 AAGAGGTACTCGCGCTCA--GCTTGGTCCTTGATGTAAGTGTCTATAAGGAGAGAATATG 287848 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGA 48495 ||||||| ||||| ||||| || |||||||| || || ||||| | ||||| | Sbjct 287849 TTTCGGAATGAATGTTTTCCATCATGATCTGAAAGCCATAGAAACAGCGAGCTTCAGCTG 287908 Query 48496 TCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 ||| || || | | || || || | | || || || || || ||||| ||||| Sbjct 287909 CCTGGACTTCATTGGAGAAGCGCTCGACAAGGTTTTCGTTGACAATGCCATCGGAAGCAG 287968 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA---GTTTATTCC 48612 ||||||| || || || || ||||| | || ||| | | | ||| ||||| Sbjct 287969 CAAAAAAAGCCAAAACGTGCGAGATAAAGTGGCGCTCATTGTCATTGAGGCGTTCATTCC 288028 Query 48613 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTT 48672 | || | | || || || | ||| | || ||||| ||||| || ||||| ||||| | Sbjct 288029 AATCGTAAAGGTCCTTGGAAAGATCCATCTCCTCAGCCGTCCAGAAGGATGCTTCTGCCT 288088 Query 48673 TTTTATACATATTCCATAT 48691 |||| ||||| | |||||| Sbjct 288089 TTTTGTACATTTGCCATAT 288107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694648524354400