Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20J132_20[genbank_20GCA_5F001263195.1_202015-08- 10] 2,335 sequences; 67,296,805 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq120 219 6e-52 >seq120 Length=370717 Score = 219 bits (242), Expect = 6e-52 Identities = 387/561 (69%), Gaps = 6/561 (1%) Strand=Plus/Minus Query 46626 TAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 46685 || |||||||||||| ||||||||||| || | ||| || | ||| || || || || Sbjct 289775 TAGACATGCAAAATCCGTGTGAAGGCCTTCGTCGCGACTGATGAGTTCATTGGAGAAAGT 289716 Query 46686 GAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAA 46745 ||| |||||||| | |||||||| |||| |||||| ||||| || || || ||||| || Sbjct 289715 GAGACCAGGCATCAAACCACGCTTCTTGATCCAAAAAATAGCAGCAAAGGACCCAGAGAA 289656 Query 46746 GAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCAT--TA 46803 ||||| ||||||||||| || || || ||||||| || | | ||| | | | Sbjct 289655 AAATATTCCTTCTACAGCGGCAAAAGCAACAAGTCGTTCCGCAAAGGTGGACTGTTGGTC 289596 Query 46804 TGA-ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGC 46862 ||| ||||| || ||||||| ||||| || ||| ||||| | || ||||| || || Sbjct 289595 TGATATCCATCTAAGAGCCCAGTCAGCTTTACGCTTGACACATGAGATGGTTTCGATGGC 289536 Query 46863 ATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATA 46922 | || ||| || ||| || ||| || | || || || || | ||| || Sbjct 289535 GTCGAATAGATGTTTCCGTTCTTCTGGATCCTTGATGTAGGTGTCGATAAGTAGAGAGTA 289476 Query 46923 CATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 46982 |||| || |||| ||||| || || || || ||||| || || | |||||||| Sbjct 289475 AGTTTCCGAGTGAACATTTTCCATCATTATTTGGAAGCCGTAGAAGCACCGTGCTTCAGC 289416 Query 46983 AATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGC 47042 | ||| | || | | ||||||||| | ||||||||||| || || || ||| Sbjct 289415 TACCTGAATTTCACTGGAGAATCGTTCAAGGAGGTTCTCATTCACAATGCCGTCGGAAGC 289356 Query 47043 AGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTT---ATT 47099 |||||| ||||| | || || || ||||| ||| || | || || ||| Sbjct 289355 AGCAAAGAATGCGAGGACGTGAGAGATGAAATACCGTTCGCTGGAGTTGAGCTTATGATT 289296 Query 47100 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159 ||| || ||| ||| | | | ||||| ||| || || ||||| |||||||||| ||| Sbjct 289295 CCAATCCATGAGATCGTGGCAGAGATCTATTTCCTCTGCGGTCCAAAATGACGCCTGTGC 289236 Query 47160 TTTTTTATACATATTCCATAT 47180 |||||||| | ||||||||| Sbjct 289235 CTTTTTATAAAAATTCCATAT 289215 Score = 170 bits (188), Expect = 3e-37 Identities = 375/558 (67%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 |||||||| || || | || ||||| | || || | ||||| || || || | Sbjct 287551 CATGCAAAGTCGGTGTGCATACCCTCATCACGGCTGATAAGCTCGTTTGAGAAAGTCAAG 287610 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 || ||||| || ||||| || || ||||| || || | || || || || || ||||| Sbjct 287611 CCGGGCATGAGACCACGTTTCTTTAGCCAGAAGATTGATGCAAAGGAGCCTGAGAAGAAG 287670 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA--- 46806 |||||||| |||||||| ||||| || | | || || || | | | || | | Sbjct 287671 ATGCCTTCCACAGCCGCAAATGCAACTAACCGTTCGGCGAAAGTAGAGTTCTTGTCAGAG 287730 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 |||||| | ||||||| |||||||| || | ||| || || ||||| || |||| | Sbjct 287731 ATCCACTTCAGAGCCCATTCAGCCTTCCGTTTAATACAGGGAATGGTTTCGATGGCATCA 287790 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 ||||| | | ||| | || || | || || ||||| | ||| ||| || Sbjct 287791 AAGAGGTACTCGCGCTCAGCTTGGTCCTTGATGTAAGTGTCTATAAGGAGAGAATATGTT 287850 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || |||||||||||||| || |||||||| || || ||||| | ||||||| | Sbjct 287851 TCGGAATGAATGTTTTCCATCATGATCTGAAAGCCATAGAAACAGCGAGCTTCAGCTGCC 287910 Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAA-ATTCTCATTCACTATTCCATCACTAGCAGC 47045 || || || | | || || || ||||| || || || || || ||||| |||||| Sbjct 287911 TGGACTTCATTGGAGAAGCGCTC-GACAAGGTTTTCGTTGACAATGCCATCGGAAGCAGC 287969 Query 47046 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCA---GTTTATTCCA 47102 |||||| ||||| || || ||||| | |||| | | | | ||| |||||| Sbjct 287970 AAAAAAAGCCAAAACGTGCGAGATAAAGTGGCGCTCATTGTCATTGAGGCGTTCATTCCA 288029 Query 47103 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTT 47162 || | | || || || | ||| | || ||||| |||||||| || || ||||| || Sbjct 288030 ATCGTAAAGGTCCTTGGAAAGATCCATCTCCTCAGCCGTCCAGAAGGATGCTTCTGCCTT 288089 Query 47163 TTTATACATATTCCATAT 47180 ||| ||||| | |||||| Sbjct 288090 TTTGTACATTTGCCATAT 288107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712913591227200