Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20J132_20[genbank_20GCA_5F001263195.1_202015-08- 10] 2,335 sequences; 67,296,805 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq666 156 1e-32 seq641 127 5e-24 seq65 87.8 4e-12 >seq666 Length=522490 Score = 156 bits (172), Expect = 1e-32 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || || || || || || |||||||| ||| || ||| Sbjct 282464 CAAATTTTCGTCAAGACGTTGACGGGGAAGACCATTACGCTCGAGGTTGAATCGTCGGAC 282405 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| || ||||||||||| ||||| ||||| || ||||||||| Sbjct 282404 ACAATTGATAACGTCAAGGCGAAAATTCAGGACAAGGAAGGCATCCCCCCCGACCAGCAA 282345 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| |||||||| || || || | |||||| | ||||| ||| | Sbjct 282344 CGCTTGATCTTTGCCGGGAAACAGCTTGAGGACGGCCGCACTCTTTCTGATTACAACATT 282285 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || ||||| || || || ||||||||| || | ||| Sbjct 282284 CAGAAAGAGTCGACGCTCCATCTTGTTCTGCGTCTC 282249 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || | || || || || |||||||| |||||||| ||| || Sbjct 283022 CAGATTTTTGTAAAGACCTTGACTGGGAAGACCATCACCCTTGAGGTGGAGTCCTCCGAT 282963 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| ||||| || || || ||||| || || || ||||||||| Sbjct 282962 ACCATCGACAATGTCAAAACCAAGATCCAAGATAAGGAAGGTATTCCCCCTGACCAGCAA 282903 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||||||||||||||||||||| | || ||| | ||||| || | Sbjct 282902 CGTTTGATCTTCGCCGGAAAACAGCTCGAAGATGGTCGTACACTTTCTGATTACAATATT 282843 Query 178104 CAAAAAGAATCAACACTGCATCT 178126 || || ||||| || || ||||| Sbjct 282842 CAGAAGGAATCTACCCTTCATCT 282820 Score = 149 bits (164), Expect = 2e-30 Identities = 156/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||||| |||||||| || ||||| || ||||| ||| || ||| Sbjct 282744 CAAATTTTTGTCAAGACTCTGACAGGAAAGACCATCACTCTTGAGGTTGAATCGTCCGAC 282685 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| |||||||||||||| ||||| || ||||| || |||||| Sbjct 282684 ACTATTGATAACGTCAAGGCCAAGATTCAGGACAAGGAAGGTATACCTCCCGATCAGCAA 282625 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || || || |||||||| | ||||| | || || || | Sbjct 282624 CGCTTGATCTTCGCCGGCAAGCAACTTGAAGATGGTCGCACTCTCTCGGACTACAATATT 282565 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 282564 CAGAAGGAATCCACCCTCCACCTTG 282540 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || ||||| ||||| ||||| || | || ||||| || ||| Sbjct 282236 CAGATTTTTGTGAAGACGCTCACCGGAAAGACGATTACGTTGGAAGTGGAGTCGTCGGAC 282177 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| ||| |||||||||||||| ||||| || || || ||||||||| Sbjct 282176 ACGATTGACAACGTGAAAGCGAAGATTCAGGACAAGGAAGGTATTCCGCCTGACCAGCAA 282117 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || || |||||||| || ||||| ||| |||| |||||| | Sbjct 282116 CGCCTAATCTTTGCGGGCAAGCAACTCGAAGACGGGAGGACGCTTTCCGACTATAACATA 282057 Query 178104 CAAAAAGAATCAACACTGCATCT 178126 || || || || |||||||| Sbjct 282056 CAGAAGGAGAGCACCCTGCATCT 282034 Score = 96.9 bits (106), Expect = 8e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 178024 GAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGA 178083 |||| ||||| ||||||||||| || ||||| || || ||||| ||||||||||| | | Sbjct 283150 GAATTCCTCCCGACCAGCAACGTCTCATCTTTGCTGGTAAACAACTCGAAGATGGCCGCA 283091 Query 178084 CTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | ||| |||| |||||| | || || ||||| || |||||||||| Sbjct 283090 CGCTTTCCGACTATAACATTCAGAAGGAATCCACGTTGCATCTTGT 283045 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || |||||||| | || ||||| || |||||||| ||||| || || ||| Sbjct 283301 CAAATCTTTGTGAAAACCTTGACTGGAAAGACCATCACCCTTGAGGTTGAGTCTTCCGAC 283242 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| || |||||| |||||||| ||||||||||| Sbjct 283241 ACCATCGATAATGTCAAAGCCAAGATTCAAGACAAAGAAGG 283201 >seq641 Length=242067 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || || || || || ||||| || || ||| || ||| Sbjct 74092 CAGATCTTTGTCAAGACTTTGACGGGCAAGACTATAACCCTTGAAGTTGAATCTTCTGAC 74151 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || |||||||| ||||| || || || ||||| || || ||| Sbjct 74152 ACGATCGATAACGTTAAGGCGAAGATTCAAGACAAGGAGGGTATTCCTCCTGATCAACAA 74211 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || || || || || ||||| | || || |||||||||| | Sbjct 74212 CGTCTTATCTTCGCTGGCAAGCAACTTGAGGATGGGCGAACCCTCTCCGATTATAATATA 74271 Query 178104 CAAAAAGAATCAACACTGCATCT 178126 || || ||||| ||||||||||| Sbjct 74272 CAGAAGGAATCGACACTGCATCT 74294 Score = 98.7 bits (108), Expect = 2e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 178024 GAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGA 178083 |||| ||||| ||||| ||||| |||||||| || || || |||||||||||||| |||| Sbjct 73463 GAATTCCTCCCGACCAACAACGCCTTATCTTTGCTGGGAAGCAGCTCGAAGATGGGAGGA 73522 Query 178084 CTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 | || | ||||| ||| |||| ||||| || || || ||||| ||| Sbjct 73523 CGCTCTCTGATTACAACATCCAGAAAGAGTCTACTCTTCATCTAGTT 73569 >seq65 Length=298600 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || ||||| ||||||||||| || |||||| Sbjct 101283 CAAATATTCGTTAAGACCCTCACGGGTAAGACGATTACCCTCGAGGTCGAGTCGTCAGAC 101224 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| || ||||| || ||||||||||| ||||| Sbjct 101223 ACCATCGACAATGTCAAGGCCAAAATTCAGGACAAGGAAGG 101183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203695187747990