Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3 183 3e-41 >seq3 Length=1746238 Score = 183 bits (202), Expect = 3e-41 Identities = 305/441 (69%), Gaps = 0/441 (0%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 ||||| ||||| ||| || | ||||| || | |||||||| || || || || || Sbjct 1247212 AGACAAGCGAAGTCGGTGTGCATACCCTCATCACGACTGATAAGCTCATTTGAGAAGGTT 1247271 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 || || |||||| || || ||||| | |||||| || | || || || || |||||| Sbjct 1247272 AAGCCAGGCATCAGACCACGCTTCTTGAGCCAAAAGATTGATGCAAAGGAGCCTGAAAAG 1247331 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 || || || || || | |||||| |||| |||||||||||| | || | || |||| | Sbjct 1247332 AAGATGCCTTCCACAGCTGCAAATGCGACCAATCGTTCGGCGAATGTAGAGTTCTTGTCA 1247391 Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCC 17200 ||||| || | |||| || || || |||| || || || || || ||||| Sbjct 1247392 GATATCCACTTGAGGGCCCATTCAGCCTTACGCTTGATACAGGGGATGGTCTCGATGGCA 1247451 Query 17201 TTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTAC 17260 | ||| | | ||| ||| | |||| | || || || || ||||| || |||| Sbjct 1247452 TCAAAAAGATACTCGCGTTCAGCTTGGTCCTTGATGTAAGTGTCTATGAGGAGAGAGTAC 1247511 Query 17261 ATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCT 17320 ||||||| || ||||| ||||| || ||||| || || ||||| || ||||| || Sbjct 1247512 GTTTCGGAATGAATGTTTTCCATCATGATTTGAAAACCATAGAAGCAGCGAGCTTCAGCG 1247571 Query 17321 ATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCG 17380 |||||||| | | || ||||| | || |||||||| |||||||| ||| || Sbjct 1247572 GCCTGAACTTCGTTGGAAAAGCGTTCGACAAGGTTTTCGTTGACGATGCCATCGGAAGCA 1247631 Query 17381 GCGAAAAACGCCAATATATGC 17401 || ||||| ||||| | |||| Sbjct 1247632 GCAAAAAAGGCCAAAACATGC 1247652 Score = 154 bits (170), Expect = 2e-32 Identities = 383/571 (67%), Gaps = 13/571 (2%) Strand=Plus/Minus Query 16955 AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014 |||| ||||||||| ||||| || | |||||||| | |||||| ||||| || || Sbjct 1249485 AACAACAGACATGCAAAATCCGTGTGAAGGCCCTCGTCGCGGCTGATGAGTTCATTGGAG 1249426 Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074 || || | || ||||| ||| || ||||| | ||| || || || || || |||||| Sbjct 1249425 AACGTAAGACCAGGCATTAATCCCCGCTTCTTGATCCAGAAGATAGCAGCAAAAGACCCA 1249366 Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCT 17134 || || || || || || || | || || || | | |||||| || | || | | | Sbjct 1249365 GAGAAAAAGATCCCTTCTACAGCGGCGAAAGCAACGAGTCGTTCAGCAAAAGTGGACTGT 1249306 Query 17135 TTGTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTC 17193 | | | ||| |||||| | | |||| || ||||| |||| | || || ||||| Sbjct 1249305 T-GATCCGATATCCATCTGAGAGCCCAATCAGCTTTACGCTTAACACATGAGATGGTTTC 1249247 Query 17194 TATGGCCTTAAATA-ATTTCT-CTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGT 17251 ||||| | || | || | | | || | ||| | || | || || |||||||| ||| Sbjct 1249246 GATGGCGTCGAAAAGATGTGTGCGTTCTTCTGGA--TCCTTGATGTAGGTATCGATAAGT 1249189 Query 17252 AGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGG 17311 | |||| |||| ||||| | || ||||| || || || ||||| ||||| || Sbjct 1249188 AAAGAGTACGTTTCCGAGTGAACATTTTCCATCATAATTTGGAAGCCGTAGAAGCAACGT 1249129 Query 17312 GCTTCCGCTATTTGAACTTCCACGTAGAAT--CGTTCCGCTAGATTTTCGTTCACGATGC 17369 || || ||||| || | ||| || ||||| | || ||||| || |||||||||| Sbjct 1249128 GCCTCAGCTATCTGTATTTC-AC-TAGAAAACCTCTCAAGGAGATTCTCATTCACGATGC 1249071 Query 17370 CGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAA 17429 ||||| || || ||||| || | | || |||||||||| ||||| | ||| Sbjct 1249070 CGTCGGAAGCAGCAAAAAATGCGAGGACGTGGGAAATGAAATATCGTTCGTTGGAGTTAA 1249011 Query 17430 G---AACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAAC 17486 | | | ||| ||| | | ||| | | | ||| | |||||||| |||||||| Sbjct 1249010 GTTTATAGTTCCAATCCATGAGATCATGACAGAGATCTATTTCTTCGGCTGTCCAAAATG 1248951 Query 17487 TAGCCACTGCCTTTTTATACATATTCCAAAT 17517 ||| ||||| |||||| | |||||| || Sbjct 1248950 ATGCCTGTGCCTGTTTATAAAAATTCCATAT 1248920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517534265751360