Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3 187 3e-42 >seq3 Length=1746238 Score = 187 bits (206), Expect = 3e-42 Identities = 387/569 (68%), Gaps = 9/569 (2%) Strand=Plus/Minus Query 16193 AACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAA 16252 |||| ||||| || || || || || || ||||| | |||||| ||||| ||||| Sbjct 1249485 AACAACAGACATGCAAAATCCGTGTGAAGGCCCTCGTCGCGGCTGATGAGTTCATTGGAG 1249426 Query 16253 AAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCC 16312 || || | || |||||| ||| || ||||| | |||||| || |||||||| ||||| Sbjct 1249425 AACGTAAGACCAGGCATTAATCCCCGCTTCTTGATCCAGAAGATAGCAGCAAAAGACCCA 1249366 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCT 16372 || || || || || || |||| || ||||| | | |||||| || | || | | | Sbjct 1249365 GAGAAAAAGATCCCTTCTACAGCGGCGAAAGCAACGAGTCGTTCAGCAAAAGTGGACTGT 1249306 Query 16373 TTATTACGA-ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTC 16431 | || ||| |||||| | | |||| || ||||| | || | ||| || ||||| Sbjct 1249305 TGATC-CGATATCCATCTGAGAGCCCAATCAGCTTTACGCTTAACACATGAGATGGTTTC 1249247 Query 16432 TATGGCCTTAAACA-ATTTCT-CTTTTTCCTGAATATCGATTATATACGTATCAATCAGT 16489 ||||| | || | || | | | || | ||| || | | || || ||||| || ||| Sbjct 1249246 GATGGCGTCGAAAAGATGTGTGCGTTCTTCTGGAT--CCTTGATGTAGGTATCGATAAGT 1249189 Query 16490 AAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGA 16549 ||| |||| |||| ||||| | || || || || || || || |||||||| || Sbjct 1249188 AAAGAGTACGTTTCCGAGTGAACATTTTCCATCATAATTTGGAAGCCGTAGAAGCAACGT 1249129 Query 16550 GCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCG 16609 ||||| ||||| |||| ||| |||| | || || |||||||||||||| ||| Sbjct 1249128 GCCTCAGCTATCTGTATTTCACTAGAAAACCTCTCAAGGAGATTCTCATTCACGATGCCG 1249069 Query 16610 TCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGA 16669 || ||||||||||| || | | ||| |||||||||| ||||| || |||| Sbjct 1249068 TCGGAAGCAGCAAAAAATGCGAGGACGTGGGAAATGAAATATCGTTCGTTGGAGTTAAGT 1249009 Query 16670 ATA---TGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTA 16726 || | |||||| | | ||| | | | ||| | |||||| | |||||||| Sbjct 1249008 TTATAGTTCCAATCCATGAGATCATGACAGAGATCTATTTCTTCGGCTGTCCAAAATGAT 1248949 Query 16727 GCCACTGCCTTTTTATACATTTTCCAAAT 16755 ||| ||||| |||||| | ||||| || Sbjct 1248948 GCCTGTGCCTGTTTATAAAAATTCCATAT 1248920 Score = 168 bits (186), Expect = 7e-37 Identities = 387/580 (67%), Gaps = 7/580 (1%) Strand=Plus/Plus Query 16181 TTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATA 16240 || ||||| | || | ||||| ||||||||| || | || || || | |||||| Sbjct 1247194 TTGAGGTGACTGAAGAGAAGACAAGCGAAGTCGGTGTGCATACCCTCATCACGACTGATA 1247253 Query 16241 AGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCA 16300 || || || || || ||||| || ||||| || || ||||| | ||| || || | Sbjct 1247254 AGCTCATTTGAGAAGGTTAAGCCAGGCATCAGACCACGCTTCTTGAGCCAAAAGATTGAT 1247313 Query 16301 GCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCG 16360 ||||| || || |||||||| || || || |||| |||||| |||| |||||||| ||| Sbjct 1247314 GCAAAGGAGCCTGAAAAGAAGATGCCTTCCACAGCTGCAAATGCGACCAATCGTTCGGCG 1247373 Query 16361 TACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAA 16420 | |||| | || | | ||||| || | ||||||| || || | || ||||| Sbjct 1247374 AATGTAGAGTTCTTGTCAGATATCCACTTGAGGGCCCATTCAGCCTTACGCTTGATACAG 1247433 Query 16421 TCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTA 16480 || || || ||||| | ||| | | ||| ||| || | || || || Sbjct 1247434 GGGATGGTCTCGATGGCATCAAAAAGATACTCGCGTTCAGCTTGGTCCTTGATGTAAGTG 1247493 Query 16481 TCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAG 16540 || || || | | |||| |||| || || ||||| || || || ||||| |||||| Sbjct 1247494 TCTATGAGGAGAGAGTACGTTTCGGAATGAATGTTTTCCATCATGATTTGAAAACCATAG 1247553 Query 16541 AAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTC 16600 ||||| ||||| || || || ||||| | |||| ||||| | ||||| || || Sbjct 1247554 AAGCAGCGAGCTTCAGCGGCCTGAACTTCGTTGGAAAAGCGTTCGACAAGGTTTTCGTTG 1247613 Query 16601 ACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAAT---ATTTTTCG 16657 ||||| || || ||||||||||| ||||| | ||| || || | | | | Sbjct 1247614 ACGATGCCATCGGAAGCAGCAAAAAAGGCCAAAACATGCGAGATAAAGTGGCGCTCATTG 1247673 Query 16658 TCA--GATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCG 16715 ||| || | | || |||||| | || |||||||| | ||||| || || | || Sbjct 1247674 TCATTGAGG--CGTTCATTCCAATCGTATATGTCTTTGGAAAGATCCATCTCCTCGGCCG 1247731 Query 16716 TCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAAT 16755 |||| ||| || |||||||||| ||||| | ||| || Sbjct 1247732 TCCAGAAGGATGCTTCTGCCTTTTTGTACATCTGCCATAT 1247771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511403200024640