Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 230 2e-55 seq1 140 3e-28 seq2 111 2e-19 >seq3 Length=1746238 Score = 230 bits (254), Expect = 2e-55 Identities = 395/572 (69%), Gaps = 11/572 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||||||||| || || || |||||||| | ||||||| |||| || Sbjct 1247771 ATATGGCAGATGTACAAAAAGGCAGAAGCATCCTTCTGGACGGCCGAGGAGATGGATCTT 1247712 Query 116696 TCCAAGGACACGAGCGACTGG---GAGCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||| |||| ||| ||| || ||| | || ||||| |||||||| || ||| | Sbjct 1247711 TCCAAAGACATATACGATTGGAATGAACGCCTCAATGACAATGAGCGCCACTTTATCTCG 1247652 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 || || |||||||||| || || ||| |||||||||||||| || || ||||| || Sbjct 1247651 CATGTTTTGGCCTTTTTTGCTGCTTCCGATGGCATCGTCAACGAAAACCTTGTCGAACGC 1247592 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 || | | || || |||| || || || || |||||||| || ||||| ||| ||| Sbjct 1247591 TTTTCCAACGAAGTTCAGGCCGCTGAAGCTCGCTGCTTCTATGGTTTTCAAATCATGATG 1247532 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTC 116928 || ||| | || || |||| ||| || |||||| ||||| ||| | | | Sbjct 1247531 GAAAACATTCATTCCGAAACGTACTCTCTCCTCATAGACACTTACATCAAGGACCAAGCT 1247472 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 | | | || || |||| | ||||||||||| || || || |||| ||||| Sbjct 1247471 GAACGCGAGTATCTTTTTG----ATGCCATCGAGACCATCCCCTGTATCAAGCGTAAGGC 1247416 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 || ||||| || ||||| | | || | | | |||| ||| || |||| || Sbjct 1247415 TGAATGGGCCCTCAAGTGGATATCTGACAAGAACTCTACATTCGCCGAACGATTGGTCGC 1247356 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 || || || || || ||| |||||||||| ||| || || | || ||||||||||| Sbjct 1247355 ATTTGCAGCTGTGGAAGGCATCTTCTTTTCAGGCTCCTTTGCATCAATCTTTTGGCTCAA 1247296 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 ||| || || || ||||| ||| | || ||| || ||||| ||| | || ||||| Sbjct 1247295 GAAGCGTGGTCTGATGCCTGGCTTAACCTTCTCAAATGAGCTTATCAGTCGTGATGAGGG 1247236 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 | |||| |||||| || ||| | || |||| Sbjct 1247235 TATGCACACCGACTTCGCTTGTCTTCTCTTCA 1247204 Score = 149 bits (164), Expect = 6e-31 Identities = 317/471 (67%), Gaps = 2/471 (0%) Strand=Plus/Plus Query 116731 CAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGT 116790 |||||| || ||||||| ||||| || || ||||| || || |||||||||||| Sbjct 1249018 CAACGAACGATATTTCATTTCCCACGTCCTCGCATTTTTTGCTGCTTCCGACGGCATCGT 1249077 Query 116791 CAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTT 116850 || |||||||| | ||| | || || || | ||| | || ||||| || ||||| Sbjct 1249078 GAATGAGAATCTCCTTGAGAGGTTTTCTAGTGAAATACAGATAGCTGAGGCACGTTGCTT 1249137 Query 116851 CTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGA 116910 ||||||||| || || ||||| || || |||||||||| ||| || || ||||| Sbjct 1249138 CTACGGCTTCCAAATTATGATGGAAAATGTTCACTCGGAAACGTACTCTTTACTTATCGA 1249197 Query 116911 CACGTACGTGCGCTCTTCGGAGGAGAAGCTC-CGTTTGTTGAACGCCATCGAGACGATGC 116969 || ||| | | | || || | || | | | | || |||||||||| || || Sbjct 1249198 TACCTACATCAAGGATCCAGAAGA-ACGCACACATCTTTTCGACGCCATCGAAACCATCT 1249256 Query 116970 CGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCT 117029 | || || || || || || ||||| || | ||||| | | | || || | | Sbjct 1249257 CATGTGTTAAGCGTAAAGCTGATTGGGCTCTCAGATGGATATCGGATCAACAGTCCACTT 1249316 Query 117030 TCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCG 117089 | | || || || || || ||||| || || || || |||| || || || ||| | Sbjct 1249317 TTGCTGAACGACTCGTTGCTTTCGCCGCTGTAGAAGGGATCTTTTTCTCTGGGTCTTTTG 1249376 Query 117090 CCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGC 117149 | || || || ||| ||||||| || || | ||||| || || || ||| ||| || | Sbjct 1249377 CTGCTATCTTCTGGATCAAGAAGCGGGGATTAATGCCTGGTCTTACGTTCTCCAATGAAC 1249436 Query 117150 TCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 ||||| | | |||||||| || || || ||||| ||| || |||||| Sbjct 1249437 TCATCAGCCGCGACGAGGGCCTTCACACGGATTTTGCATGTCTGTTGTTCA 1249487 >seq1 Length=1986796 Score = 140 bits (154), Expect = 3e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || ||||| |||||||| |||||||| |||| || ||| | || Sbjct 634455 ATGCAAATTTTTGTCAAGACGCTGACGGGCAAGACCATCACGCTCGAGGTTGAATCTTCC 634396 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | |||||| ||||| | ||||| |||||||| || | ||||| Sbjct 634395 GACACGATTGATAATG-TCAAGGCGAAAATCCAGGACAAGGAGGGCATTCCTCCTGACCA 634337 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | |||| || || |||||||| || |||| ||||| || || ||||| Sbjct 634336 ACAACGCTTGATCTTTGCCGGAAAACAGCTTGAAGACGGTCGCACTCTGTCTGATTACAA 634277 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||| ||| | ||||||||||| || |||| Sbjct 634276 CATCCAGAAAGAGTCGACGCTGCATCTCGTTCTGCG 634241 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || || || | || || || | | Sbjct 634227 ATGCAGATTTTCGTGAAGACGCTGACCGGCAAGACGATTACGTTGGAAGTGGAGTCATCG 634168 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| | |||| ||| |||| ||||| || || || || | ||||| Sbjct 634167 GACACGATTGACAACG-TGAAGGCAAAGATTCAGGACAAGGAAGGGATTCCGCCTGACCA 634109 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| |||||||| ||||| || |||| | | || || |||||||| Sbjct 634108 GCAGCGCCTGATCTTTGCGGGCAAGCAGCTTGAAGACGGGAGGACGCTTTCTGACTACAA 634049 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895 ||||||||||||| |||| ||||||| Sbjct 634048 CATCCAGAAGGAGAGCACGTTGCATCT 634022 >seq2 Length=1435055 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || ||||| |||| ||||| | | Sbjct 395049 ATGCAGATTTTCGTCAAGACTCTTACTGGCAAGACTATCACTCTCGAGGTCGAGTCATCA 394990 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| || |||| || || ||||||||||| | ||||| Sbjct 394989 GATACCATTGACAATGTCAAGGCGAAGATTCAGGATAAGGAGGGCATCCCTCCTGACCAA 394930 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| ||| |||||||| || || || | ||||| ||| ||||||||| Sbjct 394929 CAACGTCTTATCTTCGCTGGCAAACAACTCGAGGATGGCCGCACTCTCTCCGACTACAAT 394870 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || |||||||| | || || || || || Sbjct 394869 ATTCAGAAGGAATCTACACTTCACCTTGT 394841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515207916699520